BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929940
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20170.1 | Symbols: | ARM repeat superfamily protein | chr3... 2322 0.0
> AT3G20170.1 | Symbols: | ARM repeat superfamily protein | chr3:7041727-7043341
FORWARD LENGTH=1615
Length=1615
Score = 2322 bits (1257), Expect = 0.0
Identities = 1398/1468 (95%), Gaps = 2/1468 (0%)
Strand=Plus/Plus
Query 2 TTTTTGGTTATCTCCAGAAATGGGTTCTTCAGATACTGAAAGTGGAAGCAGAGGTTTTCA 61
||||| ||||||||||||||||||||||||||| || ||||||| |||||||||||||||
Sbjct 35 TTTTTCGTTATCTCCAGAAATGGGTTCTTCAGAAACGGAAAGTGAAAGCAGAGGTTTTCA 94
Query 62 AAACCCAGATTGGGAAACAGAGTTTAATCGATTCGAAAATGCGATTTCGTCTGGTTCTGC 121
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 95 AAACCCAGATTGGGAAACAGAGTTTAACCGATTCGAAAACGCGATTTCGTCTGGTTCTGC 154
Query 122 TGCAATTCGTGTAAGATCCGTTTTAAAGTTATCAGCTTTGACGAATCGTGTACCCGAGAG 181
| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||
Sbjct 155 TTCAATTCGTGTAAGATCCGTTTTAAAGTTATCAGATTTGACGAATCGAGTACCTGAGAG 214
Query 182 ATATATATCCCTTTCAATTCCGATTCTCGCCGGTCTTCTTCGTGTCTCCGATGACTCCAA 241
|||||||||| | |||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 215 CTATATATCCCGTGCAATTCCGATTCTCGCCGGTCTTCTTCGTGTCTCAGACGACTCCAA 274
Query 242 TCGTTCCGTTCAAGCTGCCGCCGCGCATTGCTTGAAACGTATCGCCTGTTGCGGCGGTGA 301
|||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||
Sbjct 275 TCGTTCCGTTCAAGCTGCCGCCGCTCATTGCTTGAAATGTATTACCTGTTGCGGCGGTGA 334
Query 302 AGAAAACGGATTTGCGGTGACGATGGGGAGGTGCGGTGTGATTGCTAGCTTGTTAGGGTT 361
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 335 AGAAAGTGGATTTGCGGTGACGATGGGGAGGTGTGGTGTGATTGCTAGCTTATTAGGGTT 394
Query 362 GTTACTTGAGGCGAATACTAATGGTAATGTGTTTCGAAGGATTTGGGTGCAATGTTTGTG 421
||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 395 GTTACTTGAAGCGAATACGGATGGTAATGTGTTTCGAAGGATTTGGGTGAAATGTTTGTG 454
Query 422 GAGTTTAGTTACTTTTGGATCTTCGATTCGAGTTGGTTTGGCTCGGTTAGGTGGTTTAGA 481
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 455 GAGCTTAGTTACTTTTGGATCTTCGATTCGAGTTGGTTTGGCTAGGTTAGGTGGTTTAGA 514
Query 482 GATTGTGATTCGTGAGTTGAATAATTGGGAAGATGGTGGAAGTAGATGGTATTTGTTAGA 541
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 515 GATTGTGATTCGTGAGTTGAATAATTGGGAAGATGATGGAAGTAGATGGTACTTGTTAGA 574
Query 542 GATCCTTAGTGCTTTGACGACGATTAGAGAGAGCAGACGTGTTCTTGTTCATTCTGGAGG 601
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 575 GATCCTTAGTGCTTTGACGACGATTAGAGAGAGCAGACGCGTTCTTGTTCATTCAGGTGG 634
Query 602 GCTTAAGTTTCTTGTAGAAGCTGCTAAAGTTGGGAACTTGGCATCGAGAGAGAGAGCTTG 661
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 635 GCTTAAGTTTCTTGTAGAAGCTGCTAAAGTTGGGAACTTGGCCTCAAGAGAGAGAGCTTG 694
Query 662 TCATGCTATCGGATTGATCGGTGTTACTAGACGAGCTCGGCGAATGTTAGTTGAAGCAGG 721
||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 695 TCATGCTATCGGACTGATCGGTGTTACTAGACGAGCTCGGCGAATACTGGTTGAAGCAGG 754
Query 722 AGTGATTCCAGCACTTGTGGATCTATATCGAGATGGGTTTGATAAGGCAAAGCTTTTAGC 781
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 755 AGTGATTCCAGCACTTGTGGATCTGTATCGAGATGGGGATGATAAGGCAAAGCTTTTAGC 814
Query 782 TGGTAATGCCTTAGGGATCATATCTGCTCAGACCGAGTACATTAGGCCTGTCACTGAAGC 841
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 815 TGGTAATGCCTTAGGGATCATATCTGCTCAGACTGAGTACATTAGGCCTGTCACTGAAGC 874
Query 842 TGGTTCCATTCCTTTGTATGTCGAGCTTCTCTCGGGACAAGA-CCCGATGGGGAAAGATA 900
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 875 TGGTTCCATTCCTTTGTATGTCGAGCTTCTCTCGGGACAAGATCCC-ATGGGGAAAGATA 933
Query 901 TAGCAGAGGATGTGTTCTGTATATTAGCTGTAGCTGAGGGTAATGCTGTTTTGATAGCGG 960
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 934 TTGCAGAGGATGTGTTCTGTATATTAGCTGTAGCTGAAGGTAATGCTGTTTTGATAGCGG 993
Query 961 AACAACTGGTGAGGATCTTGAGAGAAGGGGATTACGACGCCAAGCTTGCAGCTTCTGATG 1020
|||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||
Sbjct 994 AACAACTGGTGAGGATCTTGAGAGCAGGGGATAACGAAGCCAAGCTTGCAGCTTCTGATG 1053
Query 1021 TGTTATGGGATCTTGCGGGTTATAGGCATTCTGTGTCTGTTATTAGAGAGTCTGGCGCTA 1080
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 1054 TGTTATGGGATCTTGCGGGTTATAGGCATTCTGTATCTGTTATTAGAGGGTCTGGCGCAA 1113
Query 1081 TTCCTTTGCTAATCGAGCTTTTGAGAGATGGGTCCCTTGAGTTCAGAGAGAGGATTTCGG 1140
|||||||||| || |||||| ||||||||||||| ||||||||||||||||||||||| |
Sbjct 1114 TTCCTTTGCTTATTGAGCTTCTGAGAGATGGGTCACTTGAGTTCAGAGAGAGGATTTCTG 1173
Query 1141 GAGCTATTTCTCAGTTGAGTTACAATGAGAACGACCGTGAGGCCTTTTCGGATTCCGGTA 1200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1174 GAGCTATTTCTCAGTTGAGTTACAATGAGAACGACCGTGAGGCCTTTTCTGATTCCGGTA 1233
Query 1201 TGATACCGATTTTGATTGAATGGTTGGGGGATGAGTCAGAAGAGCTCAGGGATAATGCAG 1260
||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 1234 TGATACCGATTCTGATTGAATGGTTGGGGGATGAGTCGGAAGAGCTCAGGGATAACGCAG 1293
Query 1261 CTGAGGCACTTATTAATTTTTCTGAAGACCAAGAGCATTATGCTAGAGTACGTGAGGCAA 1320
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1294 CTGAGGCACTTATTAATTTTTCTGAAGACCAAGAGCATTATGCTAGAGTGCGTGAGGCAA 1353
Query 1321 TAGGTCATCCTGTGTTTCAGAGTATGCAGAGCAGACTGGCTAGAATCCGAGCTTCCCATG 1380
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 TAGGCCATCCTGTGTTTCAGAGTATGCAGAGCAGACTGGCTAGAATCCGAGCTTCCCATG 1413
Query 1381 AACTGATGGTTCGGTCAATGCGAAGGGTTACAATCGAACATCTTGCCCATAACCATGATC 1440
||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1414 AACTGATGGTTCGATCAATGCGAAGGGTTACAATCCAACATCTTGCCCATGACCATGATC 1473
Query 1441 TTCCCTGATCTGATGGGCAAATTAAGCT 1468
|||| |||||||| ||||||||||||||
Sbjct 1474 TTCCATGATCTGAAGGGCAAATTAAGCT 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5