BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929946
Length=606
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20230.1 | Symbols: | Ribosomal L18p/L5e family protein | c... 874 0.0
> AT3G20230.1 | Symbols: | Ribosomal L18p/L5e family protein |
chr3:7055353-7056758 REVERSE LENGTH=929
Length=929
Score = 874 bits (473), Expect = 0.0
Identities = 568/613 (93%), Gaps = 10/613 (2%)
Strand=Plus/Plus
Query 1 ACTCTTGAAGCTCGACGAACATGTCTTGCTTGGTCTCATCAACGTGCTCCCTCGTCCCCT 60
|||||| |||||||||||| |||||||||||| | |||||||| ||||| ||||||||||
Sbjct 60 ACTCTTCAAGCTCGACGAAGATGTCTTGCTTGATTTCATCAACTTGCTCACTCGTCCCCT 119
Query 61 TCGACTCGAACCTTTCTCGGTC-AAGTCGTTTAACGAAACTGGGCTCGT-CAATTTCATG 118
|||||||||| || |||| || || |||||| || |||||||| || | || |||||||
Sbjct 120 TCGACTCGAATCTGACTCGTTCGAA-TCGTTTCACCAAACTGGGTTC-TGCAGTTTCATG 177
Query 119 GCAATCTTCATTTCCCAAACTCTCCGTCGAAATCGGCTCTGTTATCTCATCTCCCATTGT 178
||||||||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 178 GCAATCTTCCTTTCCTAAACTCTCCATCGAAATCGGCTCTGTTATCTCATCCCCCATTGT 237
Query 179 CAAAAAGGATTCTTTTGTGCAAGCTGCGTGGACTCGAAGATCACGTGGTGAAGCAGCGAA 238
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 238 CAAGAAGGATTCTTTTGTGCAAGCTGCGTGGACTCGAAGATCACGAGGTGAAGCAGCGAA 297
Query 239 AAGACCCAACAGGAAGTCATGGAAACAGAGAACAGACATGTACATGAGGCCTTTCCTGT- 297
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 298 AAGACCCAACAGGAAGTCATGGAAACAGAGAACGGACATGTACATGAGGCCTTTCCT-TC 356
Query 298 TCAATGTTTTCTTCTCCAGGAAGTTCATACACGCCAAAGTGATGCATAGGCCAACAAGCA 357
| ||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 357 TGAATGTGTTCTTCTCCAGGAAATTCATACACGCTAAAGTGATGCATAGGCCAACAAGCA 416
Query 358 AAGTCATTTCGGTTGCCACCACAAATGCAAGAGATATAAGGACTAATATACCGTCTCTTG 417
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 417 AAGTCATTTCAGTTGCCACCACAAATGCTAGAGATATAAGGACTAATATACCGTCTCTTG 476
Query 418 TCGATAACGAAGCGTGTAGACTCATCGGTAAGCTCATTGCTGAGCGTTCGATGGAAGCAG 477
| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 477 TTGATAACGAAGCGTGTAGACTCATCGGTAAGCTCATAGCTGAGCGTTCAATGGAAGCAG 536
Query 478 ACGTCTATGCTGTGTCTTATGAGCCAAGAAAGGGAGAAAGAATTGAAGGGAAGCTAGGGA 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 ACGTCTATGCTGTCTCTTATGAGCCAAGAAAGGGAGAAAGAATTGAAGGGAAGCTAGGGA 596
Query 538 TTGTAATCGATACGATCAAGGAACAAGGCATTATTTTTGTTCCTTGATTCA--CTCT-T- 593
||||||||||||| || |||||||| ||||||||||||||||||||||||| |||| |
Sbjct 597 TTGTAATCGATACTATTAAGGAACATGGCATTATTTTTGTTCCTTGATTCATTCTCTCTT 656
Query 594 AGAACAAATGACT 606
|||| ||||||||
Sbjct 657 AGAATAAATGACT 669
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29186039407
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5