BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929958
Length=1188
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20320.1 | Symbols: TGD2 | trigalactosyldiacylglycerol2 | ch... 1960 0.0
> AT3G20320.1 | Symbols: TGD2 | trigalactosyldiacylglycerol2 |
chr3:7087471-7089862 REVERSE LENGTH=1449
Length=1449
Score = 1960 bits (1061), Expect = 0.0
Identities = 1142/1182 (97%), Gaps = 1/1182 (0%)
Strand=Plus/Plus
Query 1 TTTTTTATTGGATTTGGAA-GATGATTGGGAATGCGGTAATTCAAGTTCCATCATCACTA 59
|||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||
Sbjct 97 TTTTTTATTGAATTTGGAAGGATGATTGGGAATCCAGTAATTCAAGTTCCATCATCACTA 156
Query 60 ATGCCATCATCTTCCATGATTGCTTGCCCTCGAGTTTCTCCCAATGGGATTCCTTATCTT 119
||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||||
Sbjct 157 ATGCCATCATCCTCCATGATTGCTTGTCCTCGAGTTTCACCCAATGGGGTTCCTTATCTT 216
Query 120 CCACCGAAACCTAGAACTAGGCATTTAGTGGTCAGAGCTGCATCCAATTCCGACGCTGCT 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 217 CCACCAAAACCTAGAACTAGGCATTTAGTGGTCAGAGCTGCATCCAATTCCGATGCTGCT 276
Query 180 CATGGTCAACCATCGTCTGATGAGGGGAAGAATCCGCTCACGGTTGTTTTGGATGTGCCA 239
|||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 277 CATGGTCAACCATCGTCTGATGGGGGGAAGAATCCTCTCACCGTTGTTTTGGATGTGCCC 336
Query 240 AGGAATATATGGAGACAGACTTTAAAACCTTTGAGTGATTTTGGGTTTGGTAAGAGAAGT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 AGGAATATATGGAGACAGACTTTAAAACCTTTGAGTGATTTTGGGTTTGGTAAGAGAAGT 396
Query 300 GTTTGGGAAGGTGGGGTTGGTTTGTTTATTGTCTCTGGAGCTACACTTCTTGCTCTTAGC 359
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 397 ATTTGGGAAGGTGGTGTTGGTTTGTTTATTGTCTCTGGAGCTACTCTTCTTGCTCTTAGC 456
Query 360 TGGGCTTGGTTGCGAGGGTTTCAAATGCGTTCCAAGTTTAGGAAATATCAGACTGTGTTT 419
||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct 457 TGGGCTTGGTTGCGAGGTTTTCAAATGCGGTCGAAGTTTAGGAAATATCAGACTGTGTTT 516
Query 420 GAGCTTAGGCATGCATCAGGCATTTGCACGGGAACACCGGTTAGGATCCGTGGGGTTACT 479
|||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 517 GAGCTTAGTCATGCTTCTGGTATTTGCACGGGAACACCGGTTAGGATCCGTGGGGTTACT 576
Query 480 GTTGGTACGATAATCCGTGTTAATCCTTCTTTGAAGAATATTGAAGCTGTTGCTGAGATA 539
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 577 GTTGGTACGATTATCCGTGTTAATCCTTCCTTGAAGAATATTGAAGCTGTTGCTGAGATA 636
Query 540 GAGGATGATAAGATTATTATCCCGAAGAATTCACTGGTTGAGGTGAATCAGTCTGGTCTT 599
|| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 637 GAAGATGATAAGATTATTATCCCGAGGAATTCATTGGTTGAGGTGAATCAGTCTGGTCTT 696
Query 600 CTAATGGAAACTATGATCGACATTATGCCTAGAAATCCGATACCAGAACCTTCAGTAGGA 659
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 697 CTAATGGAAACTATGATCGACATTATGCCTAGGAATCCGATACCAGAACCTTCAGTAGGA 756
Query 660 CCTCTGCATCCTGAATGTGGTAAAGAAGGTCTGATCGTTTGTGATAGGCAGACGATAAAA 719
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 757 CCTCTGCATCCTGAATGTGGTAAGGAAGGTCTGATCGTTTGTGATAGGCAGACAATAAAA 816
Query 720 GGAGTGCAAGGAGTTAGTTTAGATGAATTAGTTGGAATTTTCACTCGTATTGGACGCGAA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 817 GGAGTGCAAGGAGTTAGTTTAGATGAATTAGTTGGAATTTTCACTCGTATTGGACGCGAA 876
Query 780 GTAGAGGCCATTGGTGTTGCCAATACGTATTCGCTTGCTGAGAGAGCGGCTTCGGTTATT 839
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 877 GTTGAGGCCATTGGTGTTGCCAATACGTATTCGCTTGCTGAGAGAGCTGCTTCGGTTATT 936
Query 840 GAGGAAGCAAGGCCATTGCTCAAAAAGATTCAAGCCATGGCTGAAGATGCTCAACCTTTG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 937 GAGGAAGCAAGGCCATTGCTCAAAAAGATTCAAGCCATGGCTGAAGATGCTCAACCTTTG 996
Query 900 CTCTCTGAGTTTCGTGATAGCGGCTTGCTCAAGGAAGTTGAGTGTCTTACTAGAAGCCTT 959
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 997 CTCTCTGAGTTTCGTGATAGCGGCTTGCTCAAGGAAGTTGAGTGTCTTACTCGAAGCCTT 1056
Query 960 ACCCAAGCTTCTGACGATTTGAGAAAGGTTAATTCGTCAATTATGACACCTGAAAATACA 1019
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1057 ACCCAAGCTTCTGACGATTTGAGAAAGGTTAATTCGTCAATTATGACTCCTGAGAATACA 1116
Query 1020 GAACTCATACAGAAGTCAATCTACACTCTGGTTTATACTTTGAAGAACGTCGAGAGTATA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GAACTCATACAGAAGTCAATCTACACTCTGGTTTATACTTTGAAGAACGTCGAGAGTATA 1176
Query 1080 AGCTCAGATATTCTGGGGTTCACAGGCGATGAAGCCACAAGAAAAAACCTTAAACTACTC 1139
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1177 AGCTCAGATATTCTGGGATTCACAGGAGATGAAGCCACAAGAAAAAACCTTAAACTACTC 1236
Query 1140 ATCAAATCCCTCAGCAGGCTACTATGATCAGCCTGTAGATTT 1181
||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1237 ATCAAATCCCTAAGCAGGCTACTATGATCAGCCTGTAGATTT 1278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58333033290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5