BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929959
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20330.1 | Symbols: PYRB | PYRIMIDINE B | chr3:7090106-70926... 1829 0.0
> AT3G20330.1 | Symbols: PYRB | PYRIMIDINE B | chr3:7090106-7092670
REVERSE LENGTH=1741
Length=1741
Score = 1829 bits (990), Expect = 0.0
Identities = 1094/1143 (96%), Gaps = 11/1143 (1%)
Strand=Plus/Plus
Query 1 CGAATTAGCATCC--CGCCAGAATGTCTATTGCGTCATCACTTTCTTCAGCCACACTTTG 58
||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 299 CGAATTAGCATCCTGCGCAAGAATGTCTATTGCATCATCACTTACTTCAGCCACACTTTG 358
Query 59 CGGCGCCTCAGTTTTTCCTAAAGCATTAGGCTACAGCTCTGAGTTCCCAAGCAATCTTCC 118
||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||
Sbjct 359 CGGCGCCTCAGTTTTTCCTAAAGCATTAGCCTGCAGCTCTGAGTTCCCTATCAATCTTCC 418
Query 119 CAGTCCTTCTGAAAGTTCAAAGATTTGTTTGACTTCATTTCCTGCCTCTAGGGATCCCAA 178
||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 419 CAGCCCTTTTGAAAGTTCAAAGATTTGTTTGACTTCGTTTCCTGCCTCTAGGGATCTCAA 478
Query 179 GAAAAATGCTACTTGGAATCTAACCCGAAATGTTGGTCCGATCCAAGGAATCAGGTGTCA 238
|||||||||||||| |||||| || ||||||||| | | ||| | | ||||||||||
Sbjct 479 GAAAAATGCTACTTTGAATCTGACTCGAAATGTT-G---G-TCC-A-G--TCAGGTGTCA 529
Query 239 TGCTATGCAAGCTGGAACGAGGGAATTGAAGAAATTTGAACTTAGTGATGTGATTGAAGG 298
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 530 TGCTATGCAAGCTGGGACGAGGGAGTTGAAGAAATTTGAACTTAGTGATGTGATTGAAGG 589
Query 299 GAAACAATTTGATAGGGAGATGCTAAGCGCTATATTCGATGTTGCACGAGAAATGGAAAA 358
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 590 GAAACAGTTTGATAGAGAGATGCTAAGCGCTATATTCGATGTTGCACGCGAAATGGAAAA 649
Query 359 GATAGAAAAGAGCTCTTCCCAAAGTGAAATCCTCAAGGGTTATTTAATGGCTACCCTCTT 418
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 650 GATAGAAAAGAGCTCTTCACAAAGTGAAATCCTCAAGGGTTATTTAATGGCTACCCTCTT 709
Query 419 TTATGAGCCTTCTACCCGTACCAGGCTTTCATTTGAATCTGCCATGAAACGCCTTGGAGG 478
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 710 TTATGAGCCTTCTACCCGTACCAGGCTTTCATTTGAATCTGCTATGAAACGCCTTGGAGG 769
Query 479 TGAAGTCTTAACTACTGAGAACGCTAGAGAGTTTTCGTCTGCCGCAAAAGGGGAAACACT 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 770 TGAAGTCTTAACTACTGAGAACGCTAGAGAGTTTTCGTCTGCCGCGAAAGGGGAAACACT 829
Query 539 TGAAGACACAATAAGAACAGTGGAGGGTTATTCAGATATAATTGTGATGCGACATTTTGA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 TGAAGACACAATAAGAACAGTGGAGGGTTATTCAGATATAATTGTGATGCGACATTTTGA 889
Query 599 AAGCGGTGCTGCAAGAAAAGCTGCAGCTACTGCCAATATACCTGTCATTAATGCAGGTGA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AAGCGGTGCTGCAAGAAAAGCTGCAGCTACTGCCAATATACCTGTCATTAATGCAGGTGA 949
Query 659 TGGTCCTGGAGAGCATCCTACTCAGGCTCTATTGGACGTCTATACAATCCAAAGTGAAAT 718
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 950 TGGTCCTGGAGAGCATCCTACTCAGGCTCTATTGGACGTCTATACCATCCAAAGTGAAAT 1009
Query 719 TGGAAAATTAGATGGCATCAGTGTAGCCTTAGTTGGAGATCTTGCCAACGGAAGGACAGT 778
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1010 TGGAAAATTAGATGGCATCAGTGTAGCCTTAGTTGGAGACCTTGCCAACGGAAGGACTGT 1069
Query 779 CCGGTCTCTTGCATACTTGCTTGCCAAGTTTAAAGACGTGAAGATCTACTTTGTTTCCCC 838
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1070 GCGGTCTCTTGCATACTTGCTTGCCAAGTTCAAAGACGTGAAGATCTACTTTGTTTCCCC 1129
Query 839 TGAAATTGTGAAAATGAAGGATGATATAAAAGACTATTTGACATCAAACGGGGTCGAATG 898
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 1130 TGAAATTGTGAAAATGAAGGATGATATAAAAGACTATTTGACATCAAGCGGGGTTGAATG 1189
Query 899 GGAAGAAAGTTCGGATTTAATGGAAGTAGCATCCAAGTGTGATGTAGTTTATCAAACCCG 958
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1190 GGAAGAAAGTTCAGATTTAATGGAAGTAGCATCCAAGTGTGATGTAGTTTATCAAACACG 1249
Query 959 AATCCAAAGAGAGCGGTTTGGAGAAAGGCTTGACCTTTATGAAGCAGCTCGTGGGAAGTA 1018
||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1250 AATCCAAAGAGAGAGGTTTGGAGAAAGGCTGGACCTTTACGAAGCAGCTCGTGGGAAGTA 1309
Query 1019 TATCGTGGACAAGGATCTATTAGGAGTGATGCAGAAAAAAGCTATTATCATGCATCCTTT 1078
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TATCGTAGACAAGGATCTGTTAGGAGTGATGCAGAAAAAAGCTATTATCATGCATCCTTT 1369
Query 1079 ACCAAGATTGGATGAAATCACTGCAGATGTTGATGCTGATCCAAGAGCTGCCTACTTCAG 1138
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1370 ACCGAGATTGGATGAAATCACCGCAGATGTTGATGCTGATCCAAGAGCTGCCTACTTCAG 1429
Query 1139 ACA 1141
|||
Sbjct 1430 ACA 1432
Score = 111 bits (60), Expect = 1e-23
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 1141 ATGCTGATCCAAGAGCTGCCTACTTCAGACAAGCAAAGAACGGTTTGTTCATTAGAATGG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 ATGCTGATCCAAGAGCTGCCTACTTCAGACAAGCAAAGAACGGTTTGTTCATTAGAATGG 1461
Score = 60.2 bits (32), Expect = 5e-08
Identities = 47/54 (87%), Gaps = 2/54 (4%)
Strand=Plus/Plus
Query 1181 CGGTTTGTTCATTAGAATGGTTCATGGTCGTTAAGTTAAATCCTTTAATGAACT 1234
||| ||| | ||| | || ||||||||||||||||||||||||||||||| |||
Sbjct 1484 CGG-TTGGTGATT-GGATAGTTCATGGTCGTTAAGTTAAATCCTTTAATGGACT 1535
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5