BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929960

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20340.1 | Symbols:  | Expression of the gene is downregulat...   582    7e-166


> AT3G20340.1 | Symbols:  | Expression of the gene is downregulated 
in the presence of paraquat, an inducer of photoxidative 
stress. | chr3:7092900-7093501 REVERSE LENGTH=602
Length=602

 Score =  582 bits (315),  Expect = 7e-166
 Identities = 363/386 (94%), Gaps = 4/386 (1%)
 Strand=Plus/Plus

Query  5    AAAATAGaaaaaaaaaaTGGGGAATTGTTTAAGGCATGAATCAGAAATGCATTGGGCTGG  64
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  64   AAAATAGAAACAAAAAATGGGGAATTGTTTAAGGCATGAATCAGAAATGCATTGGGCTGG  123

Query  65   TGAAGATTGGGATGAATTCATCACAGAAGATGAGGAAGATCATCATTATAGCTCTAAAAC  124
            |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  124  TGAAGACTGGGATGAATTCATCACAGAAGATGAAGAAGATCATCATTATAGCTCTAAAAC  183

Query  125  CACCAGAGATGGGAAAACAGTAGTTGTAACACGTGACAGTAAATCCTCTGTTCCATCTCA  184
            ||| |||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  184  CACAAGAGATGGCAAACCAGTAATTGTAACACGTGACAGTAAATCCTCTGTTCCATCTCA  243

Query  185  TGAGATCAAGATCAGGCTCACGAAGAAACAACTCCATGATTTACTGAGTAAAGTCAACGT  244
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  244  TGAGATCAAGATCAGGCTCACGAAGAAGCAACTCCATGATTTACTGAGTAAAGTCAACGT  303

Query  245  CCATGACTTGACCTTTCATCAACAGGCTGCTTTCTCATGTCCAAGCCTGAACAATCGTGG  304
            ||||||||||||||| || |||||  |  ||| ||||||||||| |||||||||||| ||
Sbjct  304  CCATGACTTGACCTTCCAGCAACAAAC--CTT-CTCATGTCCAATCCTGAACAATCGCGG  360

Query  305  GTACGAAGAAGCCAATCATCAACGGTTATGGAGACCGGTTCTGCAGAGCATACCAGAGGT  364
            |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||
Sbjct  361  GTACGAAGAAGCCAATCAACAACGGTTATGGAGACCGGTTCTACAGAGCATACCAGAAGT  420

Query  365  TAATTGAGGtttttttttCAGAGATG  390
            ||| |||| |||| ||||||||||||
Sbjct  421  TAACTGAG-TTTTGTTTTCAGAGATG  445



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18498531632


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5