BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929965
Length=604
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20390.1 | Symbols: | endoribonuclease L-PSP family protein... 1011 0.0
> AT3G20390.1 | Symbols: | endoribonuclease L-PSP family protein
| chr3:7109949-7111824 REVERSE LENGTH=971
Length=971
Score = 1011 bits (547), Expect = 0.0
Identities = 586/604 (97%), Gaps = 5/604 (1%)
Strand=Plus/Plus
Query 2 CGGCGCCGGAGAGAGTGAGATGACTTGGTCGGTTTTCAGATCCATAAACT-CTCCAACGC 60
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
Sbjct 111 CGGCGCCGGAGAGAGTGAGATGACTTGGTCGGTTTTCAGATCCATAAA-TACTCCAACAC 169
Query 61 TCGACCTCTCCACCGCACTTCGCTCCACTCGTACCCCATTGGTCGCTGCTGGTGTCGGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 TCGACCTCTCCACCGCACTTCGCTCCACTCGTACCCCATTGGTCGCTGCTGGTGTCGGCT 229
Query 121 GCGCAACATTTGCTGGTGTTTCTCTCTTCAGAATGTCTTCTAGATCTCCTCCTTTCGCTT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 GCGCAACATTCGCTGGTGTTTCTCTCTTCAGAATGTCTTCTAGATCTCCTCCTTTCGCTT 289
Query 181 CCCTCAGTGTCTCTGCTTCTTCTGTGAAGAAGGAAGTTGTGGCTACTGAGAAAGCACCAG 240
||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 290 CCCTCTCTGTCTCTGCTTCTTCTGTGAAGAAGGAAGTTGTGTCTACTGAGAAAGCACCAG 349
Query 241 CTGCTTTGGGACCTTACTCTCAGGCCATTAAAGCCAATAATCTTGTTTTTCTTTCAGGTG 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 350 CTGCTTTGGGACCTTACTCTCAGGCCATTAAAGCCAATAATCTGGTTTTTCTTTCAGGTG 409
Query 301 TTCTTGGACTTATACCTGAGACTGGAAAGTTTGTTTCCGAGAGCGTCGAAGATCAGACTG 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 410 TTCTTGGACTTATACCTGAGACTGGAAAGTTTGTTTCGGAGAGCGTCGAAGATCAGACTG 469
Query 361 AGCAGGTACTAAAAAACATGGGGGAGATATTGAAAGCTAGTGGTGCTGATTATTCCTCGG 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AGCAGGTACTCAAAAACATGGGGGAGATATTGAAAGCTAGTGGTGCTGATTATTCCTCGG 529
Query 421 TGGTGAAGACAACAATCATGTTGGCTGATTTGGCTGACTTCAAGAAAGTGAACGACATAT 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 530 TGGTGAAGACAACAATCATGTTGGCTGATTTGGCTGACTTCAAGACAGTGAACGAGATAT 589
Query 481 ACGCCAAATACTTCCCAGCTCCTTCTCCAGCACGATCTACGTATCAAGTTGCAGCTTTGC 540
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 590 ATGCCAAATACTTCCCAGCTCCTTCTCCAGCACGATCGACGTATCAAGTTGCAGCTTTGC 649
Query 541 CTCTAAACGCCAAGATCGAGATTGAATGTATTGCAACACTCTAGACCAC-CA--TCAATC 597
||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 650 CTCTAAACGCCAAGATCGAGATTGAATGTATTGCAACACTCTAGAACACTCAAATCAATC 709
Query 598 TCTA 601
||||
Sbjct 710 TCTA 713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29085571113
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5