BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929974
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20460.1 | Symbols: | Major facilitator superfamily protein... 2215 0.0
> AT3G20460.1 | Symbols: | Major facilitator superfamily protein
| chr3:7135050-7139472 FORWARD LENGTH=1470
Length=1470
Score = 2215 bits (1199), Expect = 0.0
Identities = 1347/1418 (95%), Gaps = 11/1418 (1%)
Strand=Plus/Plus
Query 59 ACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATCAGATAAAGGCATTGGTGT 118
||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| ||||
Sbjct 57 ACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATCCGTTAAAGGAATTCGTGT 116
Query 119 --A-AATGACAGCGACG-GTGACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 174
| |||||| |||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 117 AAATAATGACGGCGAAGAG-GACGGTCCCGTTACTTTAATTCTACTCTTCACAACCTTCA 175
Query 175 CTACTCTCTGCGGTACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 234
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CTGCTCTCTGCGGCACCTTCTCCTATGGCACTGCCGCCGGCTTTACATCACCAGCTCAAA 235
Query 235 CGGGGATTATGGCAGGACTTAACCTCTCTTTGGCTGAGTTCTCATTCTTTGGAGCTGTCT 294
| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 236 CCGGGATTATGGCAGGACTGAACCTTTCTTTGGCTGAGTTCTCATTCTTTGGGGCTGTCT 295
Query 295 TAACAATTGGTGGACTTTTGGGAGCCGCGATGTCGGGAAAACTTGCTGATATCTTTGGTC 354
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 296 TAACAATTGGTGGACTTGTGGGAGCCGCGATGTCGGGAAAACTTGCTGATGTCTTTGGTC 355
Query 355 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATCGCAT 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 356 GAAGAGGCGCTTTGGGGGTTTCAAACTCGTTTTGCATGGCCGGCTGGCTTATGATTGCCT 415
Query 415 TCTCTCAGGCGACTTGGTCCCTTGATATTGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 474
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 416 TCTCTCAGGCGACTTGGTCCCTTGATATCGGAAGACTTTTTCTCGGGGTCGCAGCTGGCG 475
Query 475 TAGTC-TCTTATGTGGTACCAGTCTACATTGTTGAAATCGCGCCCAAAAAGGTCCGAGGC 533
||| | |||||||||||||||||||| |||||||||||||| |||||||| || || |||
Sbjct 476 TAG-CTTCTTATGTGGTACCAGTCTATATTGTTGAAATCGCTCCCAAAAAAGTTCGTGGC 534
Query 534 ACGTTCTCTGCGATTAACTCGCTCGTGATGTGTGGTAGCGTCGCCGTCACATACCTCCTT 593
|| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 535 ACATTCTCTGCGATTAACTCGCTTGTGATGTGTGCTAGCGTCGCCGTCACATACCTCCTT 594
Query 594 GGATCAATCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 653
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGATCAGTCATTTCATGGCAAAAATTAGCTCTCATAAGTACGGTTCCTTGTGTTTTTGAA 654
Query 654 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTCGGTGGCTGTCTAGAAACGGTCGGGTG 713
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 655 TTCGTCGGTTTATTCTTCATACCGGAGTCTCCTAGGTGGCTGTCTAGAAACGGTAGGGTG 714
Query 714 AAAGAATCGGAAGTTGCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 773
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 AAAGAATCGGAAGTTTCACTCCAACGCCTACGAGGAAACAACACTGATATCACTAAAGAG 774
Query 774 GCCGCAGAAATCAAAAAATATATGGAAT-ATCTTCAAGAATTCAAAGAAGATGGTTTTTT 832
|| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 775 GCTGCAGAAATCAAAAAATATATGG-ATAATCTTCAAGAATTCAAAGAAGATGGTTTTTT 833
Query 833 GGATCTCTTCAACCCACGATACTCTCGTGTCATTACTGTGGGAATTGGATTGCTAGTACT 892
|||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 834 CGATCTCTTCAACCCACGATATTCTCGTGTCGTTACTGTTGGAATTGGATTGCTAGTACT 893
Query 893 ACAGCAACTCGGAGGTCTCAGTGGCTATACATTTTA-CTTGAGCTCCATTTTCAAAAAAT 951
||| ||||| |||||||||||||||||||||||||| ||| ||||| || ||||||||||
Sbjct 894 ACAACAACTGGGAGGTCTCAGTGGCTATACATTTTACCTT-AGCTCGATATTCAAAAAAT 952
Query 952 CGGGGTTTCCTAACAACGTAGGAGTAATGATTTCGAGCGTGGTGCAGTCCGTGACAAGCG 1011
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 953 CGGGGTTTCCTAACAACGTAGGAGTAATGATGGCGAGCGTGGTGCAGTCTGTGACAAGCG 1012
Query 1012 TTTTAGGAATAGTAATCATTGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACGG 1071
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1013 TTTTAGGAATAGTAATCGTGGATAAATATGGAAGACGATCCCTTTTAACGGTTGCGACGA 1072
Query 1072 TCATGATGTGTTTGGGGTCATTAATTACAGGACTCTCGTTTTTGTTTCAGAGCTATGGTT 1131
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1073 TCATGATGTGTTTGGGCTCATTAATTACAGGACTATCGTTTTTGTTTCAGAGCTATGGTT 1132
Query 1132 TACTTGAACATTACACACCAATTTCAACATTCATGGGAGTGTTGATTTTTCTAACTTCGA 1191
|||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1133 TACTTGAACATTACACCCCAATTTCAACATTTATGGGAGTGTTGGTTTTTCTAACTTCGA 1192
Query 1192 TTACAATCGGAATAGGAGGCATTCCATGGGTCATGATATCCGAGATGACACCGATCAATA 1251
||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 1193 TTACAATCGGAATAGGAGGTATTCCATGGGTTATGATATCTGAGATGACACCGATCAATA 1252
Query 1252 TAAAAGGATCAGCAGGGACGCTATGCAATCTAACTAGCTGGTCCAGCAATTGGTTCGTCT 1311
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1253 TAAAAGGATCAGCAGGGACGCTATGCAATTTAACTAGCTGGTCCAGCAATTGGTTCGTCT 1312
Query 1312 CTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACAA 1371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CTTACACATTCAACTTCCTCTTCCAGTGGAGCTCTTCTGGTGTGTTTTTCATATATACAA 1372
Query 1372 TTATATCGGGTGTGGGCATCCTATTTGTGATAAAGATGGTACCAGAGACTCGAGGTCGTT 1431
| |||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 1373 TGATATCGGGTGTGGGCATCCTGTTTGTGATGAAGATGGTACCCGAGACTCGAGGTCGTT 1432
Query 1432 CGCTCGAAGAGATTCAAGCTGCCATTACCCGATAACTT 1469
|||||||||| |||||||||||||||||||||||||||
Sbjct 1433 CGCTCGAAGAAATTCAAGCTGCCATTACCCGATAACTT 1470
Score = 87.9 bits (47), Expect = 3e-16
Identities = 51/53 (96%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 48 ATGGGAGACGAACCACTTCTTCAGAAAGCCAGGATTCAAGAAGACATTGAATC 100
|||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1 ATGGGAGACGAACCACTTCTTCAGAAAGTCAAGATTCAAGAAGACATTGAATC 53
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5