BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg929992
Length=3180
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:71... 4181 0.0
AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18... 2047 0.0
> AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:7168233-7173617
FORWARD LENGTH=3438
Length=3438
Score = 4181 bits (2264), Expect = 0.0
Identities = 2436/2520 (97%), Gaps = 8/2520 (0%)
Strand=Plus/Plus
Query 649 AAACCTCTTAACAGTGATACGTCTCTTGACAGTGCAAGCTATAAGGAAACAGCAACCATT 708
||||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||||
Sbjct 677 AAACCTCTTAACAGTGATACGACTCTTGACAATGCCAGCTATAAGAAAACAGCAACCATT 736
Query 709 TCCATTTCCAATGTGGAAAAATGCACCAACCTGTCGAAAGTCCGAGCAAACCTCAAGAAA 768
|||| || |||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 737 TCCA-----AA-GTGGAAAAATGCACCAACCTATCGCAAGTCCGTGCAAACCTCAAGAAA 790
Query 769 ATATATAATAGGGTTCTTGTTGTTGATAATGTGTCTAGTGCAAAGGAAACCGTGGCTATG 828
||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 791 ATATACAATAGAGTTCGTGTTGTTGATAATGTGTCTAGTGCAAAGGAAACCGTGGCTCTG 850
Query 829 CTGATGAATCAATATAGGAATCTTGTCCATGCTTGCGATACAGAGGTGTCCAGGATTGAT 888
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 851 CTCATGAATCAATATAGGAATCTTGTCCATGCTTGCGATACAGAGGTATCCAGGATTGAT 910
Query 889 GTGAAGACTGAAACACCTGTGGACCATGGGGAGATGATATGTTTCAGTATCTATTGTGGA 948
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 911 GTGAAGACTGAAACACCTGTAGACCATGGGGAGATGATTTGTTTCAGTATCTATTGTGGA 970
Query 949 TCAGAAGCAGATTTTGGAGACGGAAAATCATGTATCTGGGTAGATGTGCTTGGCGAAAAT 1008
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 971 TCAGAAGCAGATTTTGGAGATGGTAAATCATGTATCTGGGTAGATGTGCTTGGCGAAAAT 1030
Query 1009 GGAAGGGATATCTTGGCTGAGTTTAAGCCATTTTTCGAGGACTCATCCATaaaaaaaGTA 1068
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1031 GGAAGGGATATCCTGGCTGAGTTTAAGCCATTTTTCGAAGACTCATCCATAAAAAAAGTA 1090
Query 1069 TGGCATAACTACAGCTTTGATAACCACATCATCAGAAATTATGGAATCAAGCTTTCTGGT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TGGCATAACTACAGCTTTGATAACCACATCATCAGAAATTATGGAATCAAGCTTTCTGGT 1150
Query 1129 TTTCATGGTGATACGATGCACATGGCACGATTGTGGGATTCATCTAGACGGATATCGGGT 1188
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 TTTCATGGTGATACAATGCACATGGCACGATTGTGGGATTCATCTAGACGGATATCGGGT 1210
Query 1189 GGTTATTCTCTCGAAGCACTTACAAGTGACCCAAGAGTTCTTGGGGGAACTGAGACAAAG 1248
|||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1211 GGTTATTCGCTTGAAGCACTTACAAGTGACCCAAAAGTTCTTGGGGGAACTGAGACAAAG 1270
Query 1249 GAGGAAGCAGAATTATTTGGTAAAATATCAATGAAGAAAATTTTCGGTAAGGGAAAATTG 1308
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1271 GAGGAAGCAGAATTATTTGGTAAAATATCAATGAAGAAGATTTTCGGCAAGGGAAAATTG 1330
Query 1309 AAAAAAGATGGATCAGAAGGGAAATTGGTGATCATTCCTCCTGTTAAAGAGCTACAAATG 1368
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1331 AAAAAAGATGGATCAGAAGGAAAATTGGTGATCATTCCTCCTGTTAAAGAGCTACAAATG 1390
Query 1369 GAGGATCGAGAAGCTTGGATTTCCTACTCGGCGTTGGATTCGATAAGCACTCTAAAGCTT 1428
||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 1391 GAGGATCGAGAAGCTTGGATTTCGTACTCAGCGTTGGATTCAATAAGCACTCTAAAGCTT 1450
Query 1429 TATGAGAGCATGAAGAAGCAATTGCAAGCGAAGAAATGGTTTCTTGATGGAAATCTAATT 1488
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 1451 TATGAGAGCATGAAGAAGCAACTGCAAGCGAAGAAATGGTTTCTTGATGGAAAACTAATT 1510
Query 1489 TCAAAACAGAACATGTTTGATTTCTACCAAGAATATTGGCAACCTTTTGGTGAACTTCTT 1548
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1511 TCAAAAAAGAACATGTTTGATTTCTACCAAGAATATTGGCAACCTTTTGGTGAACTTCTT 1570
Query 1549 GCCAAAATGGAATCGGAAGGAATGCTTGTAGATAGGGATTATTTGGCGCAGATTGAGATT 1608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1571 GCCAAAATGGAATCGGAAGGAATGCTTGTAGATAGGGATTATTTGGCGCAGATTGAGATT 1630
Query 1609 GTAGCCAAAGCAGAACAAGAAATTGCTGTTTCCAGGTTCCGTAGTTGGGCTTCAAAGCAT 1668
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1631 GTAGCCAAAGCAGAACAAGAAATTGCTGTTTCGAGGTTCCGTAATTGGGCTTCAAAGCAT 1690
Query 1669 TGTCCAGATGCGAAGCATATGAATGTTGGCAGTGACTCGCAATTGCGACAACTCTTTTTT 1728
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1691 TGTCCAGATGCAAAGCATATGAATGTTGGCAGTGACACGCAATTGCGACAACTCTTTTTT 1750
Query 1729 GGTGGCATTTCTAACAGTTGTAATGATGAGGATCTTCCATATGAAAAACTTTTCAAAGTT 1788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 GGTGGCATTTCTAACAGTTGTAATGATGAGGATCTTCCATATGAAAAACTTTTCAAAGTT 1810
Query 1789 CCCAATGTGGATAAGGTGATTGaaaaaggaaaaaaGAGAGCCACAAAGTTCCGGAATATC 1848
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 1811 CCCAATGTGGATAAGGTGATTGAAGAAGGAAAAAAGAGAGCCACAAAATTCCGGAATATC 1870
Query 1849 AAACTGCATAGGATTAGCGACAGGCCTTTGCCCACTGAAAAGTTCACTGCCTCAGGCTGG 1908
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1871 AAACTGCATAGGATAAGCGACAGACCTTTGCCCACTGAAAAGTTCACTGCCTCAGGCTGG 1930
Query 1909 CCCTCTGTTAGTGGAGACACCTTGAAAGCCTTAGCTGGGAAAGTCTCTGCAGGATATGAC 1968
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1931 CCCTCTGTTAGTGGAGACACCTTGAAAGCCTTAGCTGGGAAAGTCTCTGCAGAATATGAC 1990
Query 1969 TATACAGAGGGCGTTTCAGATACTTGTCTAGAAGAAAACATTGGAGATGATGATTGTATT 2028
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 TATATGGAGGGCGTTTTAGATACTTGTCTAGAAGAAAACATTGGAGATGATGATTGTATT 2050
Query 2029 TCGCTACCAGATGAAGTTTTAGAAACACAACAC-TCCAATACCACTGTTGAATCAGACAC 2087
|||||||||||||||||| |||||||||||||| || |||||| ||||||||||||||||
Sbjct 2051 TCGCTACCAGATGAAGTTGTAGAAACACAACACGTC-AATACCTCTGTTGAATCAGACAC 2109
Query 2088 ATCTGCTTATGGAACTGCATTTGATGCGTTTGGAGGGGGTGAAAGTGGAAAGGAGGCCTG 2147
||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 2110 ATCTGCTTATGGAACAGCATTTGATGCATTTGGAGGGGGTGAAAGTGGAAAGGAAGCTTG 2169
Query 2148 CCATGCTATTGCTGCATTATGTGAAGTTTGCTCCATTGATTCCTTAATATCAAATTTTAT 2207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2170 CCATGCTATTGCTGCATTATGTGAAGTTTGCTCCATTGATTCCTTAATATCAAATTTTAT 2229
Query 2208 TCTTCCTTTACAGGGAAGTAATGTGTCAGGAAAAGATGGTCGTGTCCACTGCTCCCTGAA 2267
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2230 CCTTCCTTTACAGGGAAGTAACGTGTCAGGAAAAGATGGTCGTGTCCACTGCTCCCTGAA 2289
Query 2268 TATTAACACTGAAACTGGGCGCTTATCGGCTAGAAGGCCAAATTTGCAGAACCAACCTGC 2327
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2290 TATCAACACTGAAACTGGACGCTTATCGGCTAGAAGGCCAAATTTGCAGAACCAACCTGC 2349
Query 2328 ATTGGAGAAAGATCGGTACAAGATCCGTCAGGCCTTCATAGCATCACCTGGAAATTCACT 2387
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2350 ATTGGAGAAAGATCGGTACAAAATCCGTCAGGCCTTCATAGCATCACCTGGAAATTCACT 2409
Query 2388 TATTGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTGGCACATCTTGCTAGTTGCAA 2447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2410 TATTGTTGCTGATTATGGACAGCTGGAACTTAGGATTCTGGCACATCTTGCTAGTTGCGA 2469
Query 2448 AAGCATGAAGGAAGCTTTCATAGCTGGTGGAGACTTTCACTCAAGAACAGCTATGAATAT 2507
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 2470 AAGCATGAAGGAAGCTTTCATAGCTGGTGGAGACTTCCACTCAAGAACAGCCATGAATAT 2529
Query 2508 GTATCCACATATTCGTGAAGCAGTTGAAAATGGTGAAGTGCTCCTTGAATGGCATCCACA 2567
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2530 GTATCCTCATATTCGTGAAGCTGTTGAAAATGGTGAAGTGCTCCTTGAATGGCATCCACA 2589
Query 2568 ACCTGGACAAGAGAAGCCACCAGTGCCATTGTTGAAGGATGCCTTTGCTTCTGAGAGAAG 2627
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 ACCTGGACAAGAGAAGCCGCCAGTGCCATTGTTGAAGGATGCCTTTGCTTCTGAGAGAAG 2649
Query 2628 AAAAGCAAAGATGCTTAACTTCTCGATTGCGTATGGGAAGACTGCTATTGGGCTGTCTAG 2687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650 AAAAGCAAAGATGCTTAACTTCTCGATTGCGTATGGGAAGACTGCTATTGGGCTGTCTAG 2709
Query 2688 AGATTGGAAGGTATCAATAGAAGAAGCTCAAGATACAGTTAATCTCTGGTATAATGACAG 2747
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2710 AGATTGGAAGGTATCAAGAGAAGAAGCTCAAGATACAGTTAATCTCTGGTATAATGACAG 2769
Query 2748 ACAAGAAGTCCGGAAATGGCAAGAACTACGCAAGAAAGAGGCTATACAAAATGGGTATGT 2807
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2770 ACAAGAAGTCCGGAAATGGCAAGAACTACGCAAGAAAGAAGCTATACAAAAAGGGTATGT 2829
Query 2808 ACTCACTTTGTTGGGAAGGGCTCGTAAATTCCCTGTATACCGTTCACGTGCCCaaaaaaa 2867
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 2830 ACTCACTTTGTTGGGAAGGGCTCGTAAATTCCCTGAATACCGTTCACGTGCCCAAAAGAA 2889
Query 2868 CCATATCGAACGAGCAGCAATCAACACTCCTGTTCAGGGAAGTGCGGCTGATGTTGCTAT 2927
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2890 CCATATCGAGCGAGCAGCAATCAACACTCCTGTTCAGGGAAGTGCGGCTGATGTTGCTAT 2949
Query 2928 GTGCGCTATGCTGGAGATATCAAAAAATCAACGTCTAAAAGAGCTTGGTTGGAAATTGCT 2987
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2950 GTGCGCTATGCTGGAGATATCAAATAATCAACGGCTAAAAGAGCTTGGTTGGAAATTGCT 3009
Query 2988 TCTTCAAATTCATGATGAAGTAATCTTGGAAGGACCAAATGAGTCAGCGGCGAATGCTAA 3047
||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||| |||||
Sbjct 3010 TCTACAAGTTCATGATGAAGTAATCTTGGAAGGACCAAGTGAGTCAGCGGAGAACGCTAA 3069
Query 3048 AGACATAGTTGTGAACTGCATGTCTGAACCCTTCAACGGCAAGAATATTCTCTCAGTGGA 3107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3070 AGACATAGTTGTGAACTGCATGTCTGAACCCTTCAACGGCAAGAATATTCTCTCAGTCGA 3129
Query 3108 CTTATCTGTTGATGCTAAGTGTGCTCAGAACTGGTATGCTGGAAAATAAGAGGAAAATAG 3167
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 3130 CTTATCTGTTGATGCTAAGTGTGCTCAGAACTGGTATGCTGGCAAATAAGAGGAAAATAG 3189
Score = 664 bits (359), Expect = 0.0
Identities = 448/489 (92%), Gaps = 14/489 (3%)
Strand=Plus/Plus
Query 143 TAGCCATCACAAAGGGAAATGCCAGATATTCCACTGCTACTGATTGTGGTGGTTCTCATG 202
|||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 195 TAGCAATCATAAAGGGAAATGCGGGATATTCGACTGCTACTGATTGTGGTGGTTCTCATG 254
Query 203 GGTTTCAGCATTCAGGTGGTCATCAACGGTCATCTTCTGTTGAGTTTAGTGGAGAGTGGA 262
||||||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 255 GGTTTCATCATTCA---GGTCATCAAAGGTCATCCTCTGTTGAGTTTAGTGGAGAGTGGA 311
Query 263 AGCTTAATTTGGGATCTAACACGGCGAGAATGGTACCACCAACTGTGAAACAAGCTGGAG 322
| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 312 AACTTAATTTGGGATCTAAGACGGCGAGAATGGTTCCGCCAACTGTGAAACAAGCTGGAG 371
Query 323 CTGTAAGTGCTTGGAGGGAGGAAGTCAATAATAAGTTAAGAGGAAGAAATGGCGAACATG 382
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||
Sbjct 372 CTGTAAGTGCTTGGAGGGAGGAAGTCAATAATAAGTTAAGAGGAAGAAATAGAGAATATG 431
Query 383 CTAACAACCAGGATGATGCTTTTGGTA--G----TTAT-TTC-AGA-GGCTTTGTCCCCA 433
||||||||||||||||||||||||||| | |||| || | | |||||||||||||
Sbjct 432 CTAACAACCAGGATGATGCTTTTGGTAATGGCAGTTATATTTTAAAAGGCTTTGTCCCCA 491
Query 434 AATTAGATGATGTCCAATCGTATGGAAACGGCCAGAACTTTGATTACAATCTGAAGCCTG 493
|| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AAATAGATGATGTCCATTCTTATGGAAACGGCCAGAACTTTGATTACAATCTGAAGCCTG 551
Query 494 GAACTGATATTACCACACTTGGTAGAGAATTGAATGGCTTTATGCAAACGAATAATGTTA 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 552 GAACTGATATTACCACACTTGGTAGAGAATTGAATGGCTTTATGCAAACGAATAGTATAA 611
Query 554 GAGGACCGGTCATAGCATTACCAAGCAAGGATATTGAGGTTGGGGGGA-AACCAGACGTG 612
||||| ||||| ||||||||||||||||||||||||||||||||| | ||| |||||||
Sbjct 612 GAGGATCGGTCGTAGCATTACCAAGCAAGGATATTGAGGTTGGGGAAACAAC-AGACGTG 670
Query 613 ACTCTGAAA 621
|||||||||
Sbjct 671 ACTCTGAAA 679
Score = 237 bits (128), Expect = 5e-61
Identities = 134/137 (98%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 1 TTAGCTTCACTTACTACGGCCATGGGGGTTTCTCTTCGCCACTTGTCTCCTTCCTCTTTC 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 8 TTAGCTTCACTTACTACGGCCATGGGGGTTTCTCTTCGTCACTTGTCTCCTTCCTCTTTC 67
Query 61 TGGGTTTCGCGTCGTCCTCGCGTTTCTTCTTCAATTCTTTCTTTTCTTGTGCCTCGCCGT 120
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 68 TGGGTTTCGCGTCGTCCTCGTGTTTCTTCTTCAATTCTTTCTTTTCTTGTCCCTCGCCGT 127
Query 121 CGAATCCTTTGCACCAG 137
|||||||||||||||||
Sbjct 128 CGAATCCTTTGCACCAG 144
> AT1G50840.1 | Symbols: POLGAMMA2 | polymerase gamma 2 | chr1:18839107-18844559
FORWARD LENGTH=3569
Length=3569
Score = 2047 bits (1108), Expect = 0.0
Identities = 2042/2486 (82%), Gaps = 91/2486 (4%)
Strand=Plus/Plus
Query 710 CCATTTCCAATGTGGA-AAAATGCAC-CAACCTGTCGAAAGTCCGAGCAAACCTCAAGAA 767
|||||||||| ||||| | || |||| ||||| ||||| ||||| | |||||| |||
Sbjct 895 CCATTTCCAAAGTGGAGAGAA-GCACTGAACCT-TCGAATGTCCGTGAAAACCTTGGGAA 952
Query 768 AATATATAATAGGGTTCTTGTTGTTGATAATGTGTCTAG-TGCAAAGGAAACCGTGGCTA 826
||||||| | | |||||| |||||||||||||| | || ||| ||||| ||||||||||
Sbjct 953 AATATATGACAAGGTTCTCATTGTTGATAATGTG-CAAGCTGCGAAGGATACCGTGGCTA 1011
Query 827 TGCT-GATGAATCAATATAGGAATCTTGTCCATGCTTGCGATACAGAGGTGTCCAGGATT 885
||| | ||||||| | |||||||| ||||||| | || ||||||||||||||| |||||
Sbjct 1012 AGCTCG-TGAATCAGTTTAGGAATCATGTCCATTCCTGTGATACAGAGGTGTCCGGGATT 1070
Query 886 GATGTGAA-GACTGAAACACCTGTGGACCATGGGGAGA-TGATATGTTTCAGTATCTATT 943
|| || || || ||||| ||||| ||||| || || | | |||||||||||||| || |
Sbjct 1071 GAGGTTAAGGA-AGAAACGCCTGTCGACCACGGTGA-ATTAATATGTTTCAGTATTTACT 1128
Query 944 GTGGATCAGAAGCAGATTTT-GGAGACGGAAAATCATGTATCTGGGTAGATGTGCTTGGC 1002
|||| |||||||||||||| ||| | |||||||| || |||||||| ||||| |||||
Sbjct 1129 GTGGGCCAGAAGCAGATTTTGGGA-ATGGAAAATCGTGCATCTGGGTTGATGTTCTTGGT 1187
Query 1003 GAAAATGGAAGGGATATCTTGGCTGAGTTTAAGCCAT-TTTTCGAGGACTCATCCATaaa 1061
|||||||| ||||| | ||||| |||||||| |||| |||| || ||||| | ||| |
Sbjct 1188 GAAAATGGCAGGGAGGTGTTGGCCGAGTTTAAACCATATTTT-GAAGACTCGTTCATCAG 1246
Query 1062 aaaaGTATGGCATAACTACAGCTTT-GATAACCACATCATCAGAAATTATGGAATCAAGC 1120
|||||| ||||| |||||||| ||| |||| ||||||||| || || ||||||| ||
Sbjct 1247 AAAAGTCTGGCACAACTACAG-TTTCGATAGCCACATCATTAGGAACCATGGAATTGAGA 1305
Query 1121 TTTCTGGTTTTCATGGTGATACGATGCACATGGCACGATTGTGGGATTCAT-CTA-GACG 1178
||||||||||||||| || || ||||||||||||||||| |||||||| | | | | ||
Sbjct 1306 TTTCTGGTTTTCATGCCGACACTATGCACATGGCACGATTATGGGATTC-TGC-ACGGCG 1363
Query 1179 GATATCGGGTGGTTATTCTCTCGAAGCACTTACAAGTGACCCAAGAGTTCTTGGGGGAAC 1238
|||| ||||||||||| || ||||| |||||||||||||||| |||||||||||| ||
Sbjct 1364 GATAAAAGGTGGTTATTCGCTTGAAGCGCTTACAAGTGACCCAAAAGTTCTTGGGGGCAC 1423
Query 1239 TGAGACAAAGGAGGAAGCAGAATTATTTGGTAAAATATCAATGAAGAAAATTTTCGG-TA 1297
|||||||||||||||| || || |||||||||| || ||||||| ||||| || |
Sbjct 1424 ACAGACAAAGGAGGAAGCTGAGTTCCTTGGTAAAATTTCGATGAAGACTATTTTTGGCAA 1483
Query 1298 AGGGAAAATTGAAAAAAGATGGATCAGAAGGG-AAATTGGTGATCATTCCTCCTGTTAAA 1356
| || ||| |||||||||||||||| |||||| |||| | || ||||||| |||||| ||
Sbjct 1484 ACGG-AAACTGAAAAAAGATGGATCTGAAGGGAAAATCGTTG-TCATTCCCCCTGTTGAA 1541
Query 1357 GAGCTACAAATG-GAGGATCGAGAAGCTTGGATTTCCTACTCGGCGTTGGATTCGATAAG 1415
||||| | | | || |||||||| ||||||||||| ||||| || |||||| |||||||
Sbjct 1542 GAGCTTC-AGCGAGAAGATCGAGAGGCTTGGATTTCATACTCTGCCTTGGATGCGATAAG 1600
Query 1416 CACTCTAAAGCTTTATGAGAGCATGA-AGAAGCAATTGCAAGCGAAGAAATGGTTTCTTG 1474
||| ||||||||||| |||||||||| | ||| || ||||| || | | ||| |||||
Sbjct 1601 CACACTAAAGCTTTACGAGAGCATGACA-AAGAAACTGCAATTGATGGATTGGCATCTTG 1659
Query 1475 ATGGAAATCTAATTTCAAAACAGAAC-ATGTTTGATTTCTACCAAGAATAT-TGGCAACC 1532
||||||| | | ||| | | || || ||||| ||||| ||||| || | | |||| |||
Sbjct 1660 ATGGAAAGCCAGTTTTAGGA-AGGACAATGTTGGATTTTTACCATGAGT-TCTGGCGACC 1717
Query 1533 TTTTGGTGAACTTCTTGCCAAAATGGAATCGGAAGGAATGCTTGTAGATAGGGATTAT-T 1591
|||||||||||||||| ||||||||| | ||||| || ||||||||||| || ||| |
Sbjct 1718 CTTTGGTGAACTTCTTGTAAAAATGGAAGCAGAAGGGATACTTGTAGATAGAGAGTATCT 1777
Query 1592 TGGC-GCAGATTGAGATTGTAGCCAAAGCAGAACAAGAAATTGCTGTTTCCAGGTTCCGT 1650
| || | |||| |||| ||||||||||| |||||| || |||||| | ||||| |||
Sbjct 1778 T-GCTG-AGATAGAGAAAGTAGCCAAAGCGGAACAACAAGTTGCTGGTAGTAGGTTTCGT 1835
Query 1651 AGTTGGGCTTCAAAGCATTGTCCAGATGCGAAGCATATGAATGTTGGCAGTGACTCGCAA 1710
| |||||| || ||| |||| || ||||||||| |||||||| ||||||||||| | |||
Sbjct 1836 AATTGGGCATCTAAGTATTGCCCCGATGCGAAGTATATGAATATTGGCAGTGACACACAA 1895
Query 1711 TTGCGACAACTCTTTTTTGGTGGCATTTCTAACAGTTGTAATGATGAGGAT-CTTCCA-T 1768
||||| || |||||||||||||||||||| |||| || |||| |||| | |||||| |
Sbjct 1896 TTGCGTCAGCTCTTTTTTGGTGGCATTTCCAACA---GTCATGACGAGG-TGCTTCCAGT 1951
Query 1769 ATGAAAAACTTTTCAAAGTTCCCAATGTGGATAAGGTGATTGaaaaagg-aaaaaaGAGA 1827
|||||| || |||||||| |||||| | |||||||| |||||| |||| |||||| | |
Sbjct 1952 -TGAAAAGCTCTTCAAAGTCCCCAATATTGATAAGGTTATTGAAGAAGGCAAAAAA-ACA 2009
Query 1828 GCC-ACAAAGTTCCGGAATATCAAACTGCATAGGATTAGCGACAGGCCTTTGCCCACTGA 1886
|| || ||||| || || ||||||||||||||||| || || || || || | || ||
Sbjct 2010 -CCGACGAAGTTTCGAAACATCAAACTGCATAGGATAAGTGATAGCCCACTGTCAACGGA 2068
Query 1887 AAAGTTCACTGCCTCAGGCTGGCCCTCTGTTA-GTGGAGACACCTTGAAAGCCTTAGCTG 1945
||| || |||||| || |||||||||| || |||| || ||||||| |||||||
Sbjct 2069 AAATTTTACTGCCAGTGGTTGGCCCTCTG-TAGGTGGGGATGTTTTGAAAGAGTTAGCTG 2127
Query 1946 GGAAAGTCTCTGCAGGATATGACTATACAGAGGGCGTTTCAGATACTTGTCTAGAAGAAA 2005
||||||| ||||| | ||| |||| || || | || ||||||| || ||| |||| |
Sbjct 2128 GGAAAGTTTCTGCTGAATACGACTTTATGGATGATGTCTCAGATATTTCTCTGGAAG--A 2185
Query 2006 ACATTGGAGATGATGATTGTATTTCGCTACCAGATGAAGTTTTAGAAACACAACACTCCA 2065
| ||| || ||||| || | | | | ||| || | |||||||||| | ||||
Sbjct 2186 A-GTTGTTGAGGATGA-TG-A--T-G-T---AGA--AA-CATCAGAAACACAAAAGTCCA 2232
Query 2066 ATACCA-CTGTTGAATCAGACACATCTGCTTATGGAACTGCATTTGATGCGTTTGGAGGG 2124
| | || || |||| | |||||||||||||||||||| |||| || ||| |||||||||
Sbjct 2233 AGA-CAGATGATGAAACCGACACATCTGCTTATGGAACAGCATATGTTGCATTTGGAGGG 2291
Query 2125 GGTGAAAGTGGAAAGGAGGCCTGCCATGCTATTG-CTGCATTATGTGAAGTTTGCTCCAT 2183
|||||||| ||||||||||| || |||||||||| || ||||||||||||||||||| ||
Sbjct 2292 GGTGAAAGGGGAAAGGAGGCATGTCATGCTATTGCCT-CATTATGTGAAGTTTGCTCTAT 2350
Query 2184 TGATTCCTTAATATCAAATTTTATTCTTCCTTTACAGGGAAGTAATGTGTCAGGAAAAGA 2243
|| || || || ||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 2351 AGACTCTTTGATCTCAAATTTTATTCTTCCGTTACAGGGAAGTAATGTATCAGGCAAAGA 2410
Query 2244 TGGTCGTGTCCACTGCTCCCTGAATATTAACACTGAAACTGGGCGCTTATCGGCTAGAAG 2303
|||||| ||||| |||||||| ||||| || || ||||||||||||||||| ||||||||
Sbjct 2411 TGGTCGCGTCCATTGCTCCCTTAATATCAATACAGAAACTGGGCGCTTATCAGCTAGAAG 2470
Query 2304 GCCAAATTTGCAGAACCAACCTGCATTGGAGAAAGATCGGTACAAGATCCGTCAGGCCTT 2363
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 2471 GCCAAATTTGCAGAACCAACCTGCATTGGAGAAGGATCGGTACAAGATTCGTAAGGCCTT 2530
Query 2364 CATAGCATCACCTGGAAATTCACTTATTGTTGCTGATTATGGACAGCTGGAACTTAGGAT 2423
||||||| ||||||||| ||||| |||| ||||||||||| ||| |||||||||| ||
Sbjct 2531 TGTAGCATCGCCTGGAAATACACTTGTTGTGGCTGATTATGGGCAGTTGGAACTTAGAAT 2590
Query 2424 TCTGGCACATCTTGCTAGTTGCAAAAGCATGAAGGAAGCTTTCATAGCTGGTGGAGACTT 2483
||||||||||||| || |||| |||||||||| ||||||||| | ||| || ||||| ||
Sbjct 2591 TCTGGCACATCTTACTGGTTGTAAAAGCATGATGGAAGCTTTTAAAGCAGGCGGAGA-TT 2649
Query 2484 TC-ACTCAAGAACAGCTATGAATATGTATCCACATATTCGTGAAGCAGTTGAAAATGGTG 2542
|| ||||||| ||||| |||||||||||||||||| |||||||||| || |||||||| |
Sbjct 2650 TCCACTCAAGGACAGCCATGAATATGTATCCACATGTTCGTGAAGCTGTAGAAAATGG-G 2708
Query 2543 -AAGTGCTCCTTGAATGGCATCCACAACCTGGACAAGAGAAGCCACCAGTGCCATTGTTG 2601
||||| ||||||||||||||||| ||||||| |||| |||||||| ||||| |||||
Sbjct 2709 CAAGTGATCCTTGAATGGCATCCAGAACCTGGGGAAGACAAGCCACCTGTGCCGTTGTTA 2768
Query 2602 AAGGATGCCTTTGCTTCTGAGAGAAGAAAAGCAAAGATGCTTAACTTCTCGATTGCGTAT 2661
||||||||||||| ||| |||||||||||||| |||||||||||||| || |||||||||
Sbjct 2769 AAGGATGCCTTTGGTTCAGAGAGAAGAAAAGCCAAGATGCTTAACTTTTCAATTGCGTAT 2828
Query 2662 GGGAAGACTGCTATTGGGCTGTCTAGAGATTGGAAGGTATCAA-TAGAAGAAGCTCAAGA 2720
||||| || || | ||||| ||||||||||||||||| || | || |||||||||| ||
Sbjct 2829 GGGAAAACCGCGGTCGGGCTTTCTAGAGATTGGAAGGTCTCCACTA-AAGAAGCTCAGGA 2887
Query 2721 TACAGTTAATCTCTGGTATAATGACAGACAAGAAGTCCGGAAATGGCAAGAACTACGCAA 2780
||||| |||||||||| |||||||| |||||||| |||||||||||||| | || ||
Sbjct 2888 AACAGTCGATCTCTGGTACAATGACAGGCAAGAAGTAAGGAAATGGCAAGAAATGCGTAA 2947
Query 2781 GAAAGAGGCTATACAAAATGGGTATGTACTCACTTTGTTGGGAAGGGCTCGTAAATTCCC 2840
|||||| |||||| || ||||||||||||||||||| | |||||| |||||| ||| ||
Sbjct 2948 GAAAGAAGCTATAGAAGATGGGTATGTACTCACTTTACTAGGAAGGTCTCGTAGATTTCC 3007
Query 2841 TGTAT-ACCGTTCACGTGCCCaaaaaaaCCATATCGAACGAGCAGCAATCAACACTCCTG 2899
| | | || ||||||| || | ||| |||||| || ||||||||||||||||||| |
Sbjct 3008 GGCGTCAAAGT-CACGTGCTCAGAGAAATCATATCCAAAGAGCAGCAATCAACACTCCAG 3066
Query 2900 TTCAGGGAAGTGCGGCTGATGTTGCTATGTGCGCTATGCTGGAGATATCAAAAAATCAAC 2959
| ||||||||||| ||||||||||| ||||| || ||| |||| ||||| | ||||||||
Sbjct 3067 TCCAGGGAAGTGCAGCTGATGTTGCCATGTGTGCAATGTTGGAAATATCGATAAATCAAC 3126
Query 2960 -GTCTAAAAGA-GCTTGGTTGGAAATTGCTTCTTCAAATTCATGATGAAGTAATCTTGGA 3017
|| | || || ||||||||||| ||||||||| || |||||||||||||||||||||||
Sbjct 3127 AGT-TGAA-GAAGCTTGGTTGGAGATTGCTTCTACAGATTCATGATGAAGTAATCTTGGA 3184
Query 3018 AGGACCAAATGAGTCAGCGGCGAAT-GCTAAAG-ACATAGTTGTGAACTGCATGTCTGAA 3075
|||||||| ||| ||||||| || | || |||| ||||||||||| |||| |||||| ||
Sbjct 3185 AGGACCAATTGAATCAGCGGAGA-TCGC-AAAGGACATAGTTGTGGACTGTATGTCT-AA 3241
Query 3076 -CCCTTCAACGGCAAG-AATATTCTCTCAGTGGACTTATCTGTTGATGCTAAGTGTGCTC 3133
||||| ||||| ||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct 3242 GCCCTTTAACGG-AAGGAATATTCTCTCAGTCGATTTATCTGTTGATGCAAAATGTGCTC 3300
Query 3134 AGAACTGGTATGCTGGAAAATA-AGA 3158
| ||||||||||||| ||||| |||
Sbjct 3301 AAAACTGGTATGCTGCCAAATAGAGA 3326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158176371279
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5