BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg929996

Length=433
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20557.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   673    0.0  


> AT3G20557.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G50930.1); 
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae 
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants 
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI 
BLink). | chr3:7180037-7181079 FORWARD LENGTH=844
Length=844

 Score =  673 bits (364),  Expect = 0.0
 Identities = 409/431 (95%), Gaps = 2/431 (0%)
 Strand=Plus/Plus

Query  1    AATTATCTAAGAAAGTCTCAATGGAAAAATCAGCACTAAGCAACTGTGTGAGGCGAAC-A  59
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct  84   AATTATCTAAGAAAGTCTCAATGGAAAACTCAGCACTAAGCAACTGTGTGAGGCGAACAA  143

Query  60   ATATTCTCTAATCAACAGAGAACAATACAAGAGGGTCTAGAAGAGAGTAGTTGGACAATG  119
            || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct  144  AT-TTCTCTAATCAACAGAGAACTATGCAAGAGGGTCTAGAAGAGAGTAGTTGGACAATG  202

Query  120  TACTTTGAAACCGAAGATGGATTAGGCCATTACGATGATTCTTCGATGATGTCAGACGCT  179
            ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  203  TACTTTGAAACAGAAGATGGATTAGGCCATTACGATGATTCTTCAATGATGTCAGACGCT  262

Query  180  GCTTCTCCTATGGGTTCTGTCGAAGAAGACACAGCTTCATCTCCTTCTAATAGAACCAAG  239
            |||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct  263  GCTTCTCCTATGGGTTGTGTCGAAGAAGACACCGCTTCATCTCCTTCTAACAGAACCGAG  322

Query  240  GGTCACAGTGAAATGGAAGACAATACGATAGAAGAAAAAACGATGAACGATACTAAAATT  299
            ||| |||||| |||||||||||||||||||||||||||||| |||||| ||  ||| |||
Sbjct  323  GGTTACAGTGGAATGGAAGACAATACGATAGAAGAAAAAACCATGAACAATGGTAAGATT  382

Query  300  GAGGAGAAAAGATTGAATAAAAACGGGATAATGATTGAAGAATACTGCGCAGAATTGAAG  359
            |||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct  383  GAGGAGAAAATATTGAATAAAAATGGGATAAAGATTGAAGAATACTGCGCAGAATTGAAG  442

Query  360  AAGAGAGGACTTTGCTTAGTCCCTTTGTCGATGTTGTCTAACTATATTGGTTGAAACTTT  419
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  443  AAGAGAGGACTTTGCTTAGTCCCTTTGTCGATGTTATCTAACTATATTGGTTGAAACTTT  502

Query  420  GATTACTCTTT  430
            |||||||||||
Sbjct  503  GATTACTCTTT  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20559509341


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5