BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930001
Length=698
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20600.1 | Symbols: NDR1 | Late embryogenesis abundant (LEA)... 1090 0.0
AT3G20590.1 | Symbols: | Late embryogenesis abundant (LEA) hyd... 749 0.0
> AT3G20600.1 | Symbols: NDR1 | Late embryogenesis abundant (LEA)
hydroxyproline-rich glycoprotein family | chr3:7194846-7195736
FORWARD LENGTH=891
Length=891
Score = 1090 bits (590), Expect = 0.0
Identities = 666/702 (95%), Gaps = 8/702 (1%)
Strand=Plus/Plus
Query 2 TCTTGAAAACaaaaaaaaaaTG---AATCAAGATCG-AGACACAGAACGTGGTGGAAACT 57
|||||||||||||||||||||| |||||| || | |||||||||| ||||| ||||||
Sbjct 13 TCTTGAAAACAAAAAAAAAATGAATAATCAAAAT-GAAGACACAGAAGGTGGTCGAAACT 71
Query 58 GTTGTACTTGCTGCTTAAGCTTCATCTTCACAGCTGGTCTCACCTCTCTTTTCTTATGGC 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GTTGTACTTGCTGCTTAAGCTTCATCTTCACAGCTGGTCTCACCTCTCTTTTCTTATGGC 131
Query 118 TTAGTCTCCGTGCCGG-CAAACCCAAATGCTCAATCCAAAACTTTTACATTCCTGCCCTC 176
||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 132 TTAGTCTCCGTGC-GGACAAACCCAAATGCTCAATCCAAAACTTTTTCATTCCTGCCCTC 190
Query 177 GGCAAAGACCTAAATTCACGAGACAATACCACTCTAAATTTCATGGTTCGTTGTGACAAT 236
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 GGAAAAGACCCAAATTCACGAGACAATACCACTCTAAATTTCATGGTTCGTTGTGACAAT 250
Query 237 CCAAATAGAGACCAAGGAATCTACTACGACGATGTCCACCTTAACTTCTCCACCATCAAC 296
|| |||| |||| ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 251 CCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTTAATTTTTCCACCATCAAC 310
Query 297 ACGACCAAGATCAATTCCTCTGCTCTTGTCTTAGTTGCTAACTACACAGTGCCTAAGTTT 356
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 311 ACGACCAAGATCAATTCATCTGCTCTTGTCTTAGTTGGTAACTACACAGTGCCTAAGTTC 370
Query 357 TATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGCCGCTAAACAACCAG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 TATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGTAAAGCCGCTAAACAACCAG 430
Query 417 ACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCGGTTTTCAGGTTGGATCTGAAGACT 476
|| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 431 ACGGTTTTACGAGCGGTTTTGCCTAATGGATCGGCTGTTTTCAGGTTGGATCTCAAGACT 490
Query 477 CGAGTGAGATTCAAGATTATTTTTTGGAAAACTAAGAGGTATGGGATTGAAGTTGGTGCT 536
| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||| |||
Sbjct 491 CAAGTTAGATTCAAGATTGTTTTTTGGAAAACTAAGAGGTATGGGGTTGAAGTTGGAGCT 550
Query 537 GATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCAAAAGAAAGGGATTAAGATGAAGAAA 596
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 551 GATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCAGAAGAAAGGAATTAAGATGAAGAAA 610
Query 597 TCTGATTCTTCTTTTCCATTAAGAAGCTCTTTTCCGATTTGTGTTTTGATGAATTTACTC 656
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 611 TCTGATTCTTCTTTTCCATTAAGAAGCTCTTTTCCGATTAGTGTTTTGATGAATTTACTC 670
Query 657 GTATTCTTGGCGATTCGTTAACTTTGATTAATGGTGTTGATT 698
|||||||| || |||||||||||| ||||||||||||||||
Sbjct 671 GTATTCTTTGCTATTCGTTAACTTC-ATTAATGGTGTTGATT 711
> AT3G20590.1 | Symbols: | Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family | chr3:7191686-7192453
FORWARD LENGTH=768
Length=768
Score = 749 bits (405), Expect = 0.0
Identities = 519/572 (91%), Gaps = 15/572 (3%)
Strand=Plus/Plus
Query 41 AGAACGTGGTGGAAACTGTTGTACTTGCTGCTT-AAGCTTCATCTTCACAGCTGGTCTCA 99
||||| |||| |||| |||||||| |||| ||| ||| |||||||||||| || |||||
Sbjct 24 AGAACTTGGTCGAAAATGTTGTACCTGCTTCTTCAAG-TTCATCTTCACAACTCGTCTCG 82
Query 100 CCTCTCTTTTCTTATGGCTTAGTCTCCGTGCC-GGCAAACCCAAATGCTCAATCCAAAAC 158
| ||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 83 GCGCTCTTATCTTATGGCTTAGTCTCCGTGCCAAG-AAACCCAAATGCTCAATCCAAAAC 141
Query 159 TTTTACATTCCTGCCCTCGGCAAAGACCTAAATTCACGAGACAATACCACTCTAAATTTC 218
|||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||
Sbjct 142 TTTTACATTCCTGCCCTCAGCAAAAACCTAAGCTCACGAGACAATACCACTCTAAATTTC 201
Query 219 ATGGTTCGTTGTGACAATCCAAATAGAGACCAAGGAATCTACTACGACGATGTCCACCTT 278
|||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||
Sbjct 202 ATGGTTCGTTGTGACAATCCGAATAAAGACAAAGGAATCTACTACGACGATGTCCACCTT 261
Query 279 AACTT-CTCCACCATCAACACGACCAAGATCAATTCCTCTGCTCTTGTCTTAGTTGCTAA 337
| ||| |||||||||||||||||||| || |||||| |||| |||||||||||| |||||
Sbjct 262 A-CTTTCTCCACCATCAACACGACCACGACCAATTCATCTGATCTTGTCTTAGTCGCTAA 320
Query 338 CTACACAGTGCCTAAGTTTTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGT 397
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 321 CTACACAGTGCCTAAGTTCTATCAAGGACACAAGAAGAAGGCCAAGAAGTGGGGTCAAGT 380
Query 398 AAAGCCGCTAAACAACCAGACCGTTTTACGAGCGGTTTTGCCTAATGGATCGGCGGTTTT 457
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 381 TTGGCCGCTAAACAACCAGACGGTTTTACGAGCTGTTTTGCCTAATGGATCGGCGGTTTT 440
Query 458 CAGGTTGGATCTGAAGACTCGA-GTGAGATTCAAGATTATTTTTTGGAAAACTAAGA-GG 515
|||| ||||||| ||||||| | ||||||||||||||| |||||||||||||||| | ||
Sbjct 441 CAGGCTGGATCTCAAGACTC-ATGTGAGATTCAAGATTGTTTTTTGGAAAACTAA-ATGG 498
Query 516 TAT-GG-GA-TTGAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCTCAA 572
||| || || || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 499 TATAGGAGAATTAAAGTTGGTGCTGATGTTGAAGTCAACGGTGATGGAGTTAAAGCT-AA 557
Query 573 A-AGAAAGGGATTAAGATGAAGAAATCTGATT 603
|||||| |||||||||| |||||||| |||
Sbjct 558 TGAGAAAGAGATTAAGATGGAGAAATCTAATT 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33807580931
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5