BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930003

Length=454
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 | chr3:162...   161    4e-39
  AT5G27850.1 | Symbols:  | Ribosomal protein L18e/L15 superfamil...   139    2e-32
  AT4G23800.1 | Symbols:  | HMG (high mobility group) box protein...   104    7e-22


> AT3G05590.1 | Symbols: RPL18 | ribosomal protein L18 | chr3:1621457-1623014 
FORWARD LENGTH=857
Length=857

 Score =  161 bits (87),  Expect = 4e-39
 Identities = 95/99 (96%), Gaps = 0/99 (0%)
 Strand=Plus/Minus

Query  56   CCTTGCCAGTCATGAACTCCACAAGCCTAGATGGCGAAAGAGGAGCTTTGTTGACTTTGC  115
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct  277  CCTTGCCAGTCATGAACTCCACAAGCCTAGATAGAGAAAGAGGAGCTTTGTTGACTTTGC  218

Query  116  TCATGAAAAGCCTTTTCAATATCACAACATTGAACTTGC  154
            ||||||||||||| |||||||||||| ||||||||||||
Sbjct  217  TCATGAAAAGCCTCTTCAATATCACACCATTGAACTTGC  179


> AT5G27850.1 | Symbols:  | Ribosomal protein L18e/L15 superfamily 
protein | chr5:9873152-9874598 FORWARD LENGTH=882
Length=882

 Score =  139 bits (75),  Expect = 2e-32
 Identities = 93/101 (92%), Gaps = 4/101 (4%)
 Strand=Plus/Minus

Query  56   CCTTGCCAGTCATGAACTCCACAAGCCTAGATG-GCGAAAGAGGAGCTTTGTTGACTTTG  114
            ||||||||||||||||||| ||||||||||| | | ||||||||||||||||||||||||
Sbjct  240  CCTTGCCAGTCATGAACTCTACAAGCCTAGA-GAGTGAAAGAGGAGCTTTGTTGACTTTG  182

Query  115  CTCATGAAAAGCCTTTTCA-ATATCACAACATTGAACTTGC  154
            ||||||||||||||||||| | |||||| ||||||| ||||
Sbjct  181  CTCATGAAAAGCCTTTTCAGA-ATCACAGCATTGAAGTTGC  142


> AT4G23800.1 | Symbols:  | HMG (high mobility group) box protein 
| chr4:12390167-12392710 FORWARD LENGTH=1626
Length=1626

 Score =  104 bits (56),  Expect = 7e-22
 Identities = 64/68 (94%), Gaps = 0/68 (0%)
 Strand=Plus/Minus

Query  275  CTCTCCTCTCCTTTGCATAAACCAGGAAGGCAGATACGGGATGTTTTGGCTTCAGAGGGT  334
            |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  872  CTCTCCTCTCGTTTGCATAAACAAGGAAGGCAGATACGGGATGTTTTGGCTTCAGAGGGT  813

Query  335  CATCCTCC  342
            | | ||||
Sbjct  812  CCTTCTCC  805


 Score = 63.9 bits (34),  Expect = 1e-09
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Minus

Query  332  GGTCATCCTCCAGAAGCTTCATGGCCTCCTTCTC  365
            ||||||||||||||||||||||||||||||||||
Sbjct  716  GGTCATCCTCCAGAAGCTTCATGGCCTCCTTCTC  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21615132070


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5