BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930004
Length=406
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27170.1 | Symbols: CLC-B, ATCLC-B | chloride channel B | ch... 455 2e-127
> AT3G27170.1 | Symbols: CLC-B, ATCLC-B | chloride channel B |
chr3:10024017-10027198 FORWARD LENGTH=2750
Length=2750
Score = 455 bits (246), Expect = 2e-127
Identities = 269/280 (96%), Gaps = 1/280 (0%)
Strand=Plus/Plus
Query 95 AATAAACGAAAACGATCTGTTTAAGCACGATTGGAGAAAAAGATCAAAGGCACAAGTGCT 154
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 307 AATAAACGAGAACGATCTGTTTAAGCATGATTGGAGAAAAAGATCAAAGGCACAAGTACT 366
Query 155 TCAATACGTCTTCCTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCACTGGTTTAAT 214
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TCAATACGTGTTCTTGAAATGGACGTTAGCTTGTCTTGTTGGTCTTTTCACTGGTTTAAT 426
Query 215 CGCTACTCTCATCAACTTAGCTGTTGAAAACATCGCCGGCTACAAGCTTTTAGCCGTTGG 274
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 427 CGCTACTCTCATCAACTTAGCTGTTGAAAACATCGCCGGCTATAAGCTTTTAGCCGTTGG 486
Query 275 TCACTTTCTCACTCAAGAAAGATATGTTACAGGTCTGATGGTGCTTGCTGGGGCCAATTT 334
|||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 487 TCACTTCCTCACTCAAGAAAGATATGTTACAGGTCTGATGGTGCTTGTTGGGGCGAATTT 546
Query 335 GGGACTGACGTTGGTGGCGTCTGTGCTTTGTGTTTGGCTT 374
||||||||||||||||||||||||||||||||| || |||
Sbjct 547 GGGACTGACGTTGGTGGCGTCTGTGCTTTGTGTGTG-CTT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19202280118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5