BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930011
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20660.1 | Symbols: AtOCT4, 4-Oct | organic cation/carnitine... 2516 0.0
> AT3G20660.1 | Symbols: AtOCT4, 4-Oct | organic cation/carnitine
transporter4 | chr3:7225135-7228595 REVERSE LENGTH=1802
Length=1802
Score = 2516 bits (1362), Expect = 0.0
Identities = 1541/1628 (95%), Gaps = 9/1628 (1%)
Strand=Plus/Plus
Query 1 TGTaaaaattaaaaaattaaa-TATGGAATCTCCAGATGAAAGAAACGGTAACGACGTCC 59
||||||||| |||| | |||| |||||||||||| || || |||||||||||||| ||||
Sbjct 64 TGTAAAAATCAAAACA-TAAATTATGGAATCTCCGGAGGATAGAAACGGTAACGATGTCC 122
Query 60 GACAACCGTTGCTGGAGAAAATTCCGGCGAAGAAAGAAGCGGAGGGAGAAGAGAGATTGT 119
|||||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||| |
Sbjct 123 GACAACCGCTGCTAGAGAAAATTCCGGTGAAGAAAGAAGCGGAGGGAGAGGAGAGATTAT 182
Query 120 GCATAGATGAGATGTTACAAAGATACTGCGGCGAGTTTGGTAGGTGGCAGCTGAAACACT 179
||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||
Sbjct 183 GCATAGATGAGATGTTACAAAGATATTGCGGCGAGTTTGGGAGGTGGCAGTTGAAACACT 242
Query 180 TTGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTTATGATATTTG 239
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 243 TCGTGTTGACGTGTATTGCTTGGGCTTTAGAGGCGTTCCACACGATGGTGATGATATTTG 302
Query 240 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTTGGATTGTCGGGTCGGGTCATCT-AAC 298
||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||
Sbjct 303 CCGATCAAGAACCCGAGTGGAGATGCGTCGGGTCGGATTGTCGGGTCGGGTCAT-TGAAC 361
Query 299 TGCGA-TATGGATCCGAGTTCCTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 357
||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGCGAGT-TGGATCCGAGTTCTTGGGAATGGACGGCGGGTAAAGGGAGCTCCACGGTGTC 420
Query 358 GGAGTGGGGATTGATTTGCGGTGAGAAGTATAAAGTTGGTCTTGTTCAAGCTCTTTTCTT 417
||||||||||||||||||||| || ||||||||||||||||||||||| ||||| |||||
Sbjct 421 GGAGTGGGGATTGATTTGCGGCGACAAGTATAAAGTTGGTCTTGTTCAGGCTCTCTTCTT 480
Query 418 CGCCGGATGCATGATCGGTGCAGGAGTATTCGGACATCTATCGGACTCCAAGCTAGGAAG 477
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 481 CGCCGGCTGCATGATCGGTGCAGGAGTATTCGGACATTTATCGGACTCTAAGCTAGGAAG 540
Query 478 AAAAGGCTCGCTAACAGTTGTTTGCATTATCAACGCAATCTTTGGTATCGCAACAGCTTT 537
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 541 AAAAGGCTCGCTAACAGTTGTATGCATTATCAACGCAATCTTTGGTATCGCGACAGCTTT 600
Query 538 CTCCCCAAACTATTGGACCTATGTGGTTCTCCGGTTCTTGACTGGTTTCAGCACCGGTGG 597
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 601 CTCCCCAAACTACTGGACCTATGTAGTTCTCCGTTTCTTGACTGGTTTCAGCACCGGTGG 660
Query 598 TGTTGGCCTAACTGCGTTTGTCCTAGCCACTGAACCCATAGGACCAAGCAAACGTGGTGT 657
|||||||||||| ||||||||| |||||||||||||||| ||||| |||||||| |||||
Sbjct 661 TGTTGGCCTAACCGCGTTTGTCTTAGCCACTGAACCCATTGGACCGAGCAAACGCGGTGT 720
Query 658 AGCCGGAATGTCAACTTTCTACTTCTTCTCTGCCGGCATTGCACTTCTCTCCGGCATTGC 717
|||||||||||||||||||||||||||||| || ||||||||| || | |||||||| ||
Sbjct 721 AGCCGGAATGTCAACTTTCTACTTCTTCTCCGCGGGCATTGCAGTTTTATCCGGCATCGC 780
Query 718 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCGTCTCTCTTGTT 777
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 781 TTACGTTTTCAGATCGTGGAGGGAGCTTTTTATAGTGTCATCGTTACCATCTCTCTTGTT 840
Query 778 CCTACTCATTGTTATCCCATTCATCTCCGAGTCCCCTAGGTGGTATCTCGTGAGAGGCAA 837
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 841 CCTACTCATTGTTATCCCATTCATATCCGAGTCCCCAAGGTGGTATCTCGTGAGAGGCAA 900
Query 838 AGTAGACGAGGCGATGAAGTTGATGCATTTGATCGCTAAAACGAACGGGCGCCACATTCC 897
|||||| |||||||||||| ||||||||| |||||||||||||||||| || ||||||||
Sbjct 901 AGTAGATGAGGCGATGAAGCTGATGCATTCGATCGCTAAAACGAACGGACGTCACATTCC 960
Query 898 CGCTGGAGTCACTCTTGCTCTT-GACGACGACGTGGAAAATAAAAACGGAGAGAGGAATA 956
||||| |||||||||||| || |||||||| ||||||||||| ||||| ||||||||||
Sbjct 961 AGCTGGTGTCACTCTTGCT-TTAGACGACGATGTGGAAAATAACAACGGGGAGAGGAATA 1019
Query 957 CTGCTGTTGAGGGTTCGCTCAAGGATGTTATACTGTCGCCTCTCATGCGGATCAGACTTC 1016
| ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1020 CCGCTGTTGAGGGTTCGCTGAAAGATGTTATACTGTCGCCTCTCATGCGGATGAGACTTG 1079
Query 1017 TCATTTCGGTTGCCATAAGTTTCACAGTCTCGATTGTATACTACGGACTAAGCCTCAACG 1076
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1080 TCATTTCGGTTGCCATAAGTTTCACAGTCTCTATTGTATACTACGGACTAAGCCTCAACG 1139
Query 1077 TAGTCAACCTCAAGACCAATCTCTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1136
||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAGGCAACCTCAAGACCAATCTTTACCTCAACGTCTTTGTCAACGCGGTGTCGGAAATGC 1199
Query 1137 CCGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1196
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 CGGCATTTGCTATAACCGCGGTTTTACTAGACAAGTACGGGAGGAAACCGCTGTCCATAG 1259
Query 1197 GGACACAGTGGTTCAGCTGCGTTTTCTGTCTCGTAGGATTCGCTGTATGGGGAGCTGGTC 1256
|||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 1260 GGACACAGTGGTTCAGCTGCGTTTTCTGCCTCGTTGGATTCTCTGTATGGGGAGCTGGTC 1319
Query 1257 CATGGAAATCGGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1316
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CATGGAAATCAGTTAGAATGGTGTCAGGGGTTTTAGGGATATTCGGGATGGCAGGAACGT 1379
Query 1317 ACAATCTTCTGTTCATATACATCGCAGAGCTGTTTCCAACAGTGGTGAGGAACGCAGCAT 1376
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 1380 ACAATCTTCTGTTCATATACATCGCGGAGCTGTTTCCAACAGTGGTGAGGAACGCGGCAT 1439
Query 1377 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCAATTCTGGCGCCTTTTGTGGTGGTTT 1436
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1440 TGGGTTGTGCGACTCAAGCAGCTCAAATGGGAGCGATTCTGGCGCCGTTTGTGGTGGTTT 1499
Query 1437 TAGGGGAGGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1496
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 TAGGGGAAGAGTTACCTTTTGGGGTGTTTGCGGTTTGCGGGTTAGTGGGAGGTGGGCTTG 1559
Query 1497 CGTTTTACTTGCCGGAGACGTTAAACAAGCCGTTGTATGACACAATGTCTGGAATGCACG 1556
||||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||||
Sbjct 1560 CGTTTTACTTGCCAGAGACGTTAAACAAGCCGTTGTATGATACAATGTTTGGGATGCACG 1619
Query 1557 AAGCTGAGAGTGAGAGTAACAGAGGAAGAGGAGAAGTAATATGTTAAA-GAAACAGAATT 1615
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1620 AAGCTGAGAGTGAGAGTAACAGAGAAAGAGGAGAAGTAATATGTTAAAAGAAACAGAATT 1679
Query 1616 TACTCTTA 1623
||| ||||
Sbjct 1680 TACACTTA 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5