BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930013
Length=441
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229407-72... 691 0.0
AT1G51060.1 | Symbols: HTA10 | histone H2A 10 | chr1:18926876-1... 473 5e-133
AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily... 348 3e-95
> AT3G20670.1 | Symbols: HTA13 | histone H2A 13 | chr3:7229407-7230146
FORWARD LENGTH=647
Length=647
Score = 691 bits (374), Expect = 0.0
Identities = 419/441 (95%), Gaps = 2/441 (0%)
Strand=Plus/Plus
Query 2 TCTCTCTTCCAAAATCACAAATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGTTGCTA 61
|||||||||| |||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 46 TCTCTCTTCCCAAATCACAAATGGCGGGTCGCGGCAAAACTCTCGGATCTGGCGTTGCTA 105
Query 62 AGAAGTCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTC 121
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 106 AGAAATCAACATCGAGAAGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGTATCGCTC 165
Query 122 GTTTTCTGAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTCTACTTAG 181
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 166 GTTTTCTAAAGAACGGCAAGTACGCAACACGTGTTGGTGCCGGAGCTCCGGTTTACTTAG 225
Query 182 CCGCTGTTCTCGAATACCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGG 241
|||| ||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||
Sbjct 226 CCGCCGTTCTCGAATACCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCTAGGG 285
Query 242 ATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGG 301
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 286 ATAACAAGAAGACTAGGATTGTGCCACGTCACATTCAGCTCGCGGTGAGAAACGATGAGG 345
Query 302 AGCTGAGTAAGTTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTC 361
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 AGCTGAGTAAACTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTC 405
Query 362 ACAGTCTTCTTCTTCCCAAGAAGGCTGGTGCTTCCAAACCTTCCGCTGATGAAGACTAGA 421
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 406 ACAGTCTTCTTCTTCCCAAGAAAGCTGGTGCTTCAAAACCTTCCGCTGATGAAGATTAGA 465
Query 422 TTAGGT-TTTGGTGTTGTGGT 441
||||| |||| |||||||||
Sbjct 466 TTAGGGATTTG-TGTTGTGGT 485
> AT1G51060.1 | Symbols: HTA10 | histone H2A 10 | chr1:18926876-18927646
FORWARD LENGTH=674
Length=674
Score = 473 bits (256), Expect = 5e-133
Identities = 358/407 (88%), Gaps = 7/407 (2%)
Strand=Plus/Plus
Query 21 AATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGT-TGCTAAGAAGTCAACATCGAGAA 79
|||||| |||||||| ||||| ||||||||||| || ||| |||||| ||||| | ||||
Sbjct 72 AATGGCGGGTCGTGGTAAAACACTCGGATCTGG-GTCTGCGAAGAAGGCAACAACAAGAA 130
Query 80 GCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTCGTTTTC-TGAAGAACGGC 138
||||||||||||||||||||||||| || ||||| |||||||| |||| ||||||| |||
Sbjct 131 GCAGCAAAGCCGGTCTCCAATTCCCTGTGGGTCGTATCGCTCG-TTTCTTGAAGAAAGGC 189
Query 139 AAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTCTACTTAGCCGCTGTTCTCGAATA 197
|| |||| | | |||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 190 AAATACGCCGA-ACGTGTTGGTGCCGGAGCTCCGGTTTACTTAGCCGCCGTTCTCGAATA 248
Query 198 CCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGGATAACAAGAAGACTAG 257
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 249 CCTCGCCGCTGAGGTATTGGAATTGGCTGGAAACGCAGCGAGGGATAACAAGAAGACGAG 308
Query 258 GATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGGAGCTGAGTAAGTTGCT 317
|||||| ||| | || ||||| | ||||||||||| ||||| || |||| || |||||
Sbjct 309 GATTGTTCCAAGGCATATTCAATTGGCGGTGAGGAACGATGAAGAATTGAGCAAATTGCT 368
Query 318 TGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTTCTTCC 377
|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 369 TGGAGATGTGACTATTGCTAATGGAGGTGTGATGCCTAACATTCACAATCTTCTTCTTCC 428
Query 378 CAAGAAGGCTGGTGCTTCCAAACCTTCCGCTGATGAAGACTAGATTA 424
|||||| | ||||||||||| || || ||||| || || | |||||
Sbjct 429 TAAGAAGACCGGTGCTTCCAAGCCATCTGCTGAAGACGATT-GATTA 474
> AT5G54640.1 | Symbols: HTA1, RAT5, ATHTA1 | Histone superfamily
protein | chr5:22196477-22197492 FORWARD LENGTH=669
Length=669
Score = 348 bits (188), Expect = 3e-95
Identities = 327/392 (83%), Gaps = 18/392 (5%)
Strand=Plus/Plus
Query 20 AAATGGCTGGTCGTGGAAAAACTCTCGGATCTGGCGTTGCTAAG-AAGTCAACATCGAGA 78
||||||||||||||||||||||||| ||||| || | || ||| ||| | ||||| |
Sbjct 62 AAATGGCTGGTCGTGGAAAAACTCTTGGATCCGGTGGGGCGAAGAAAG-CTACATCTCGG 120
Query 79 AGCAGCAAAGCCGGTCTCCAATTCCCCGTTGGTCGAATCGCTCGTTTTCTGAAGAA--CG 136
|| |||||||||||||| |||||||| || ||||| |||||||| ||||| || || ||
Sbjct 121 AGTAGCAAAGCCGGTCTTCAATTCCCGGTGGGTCGTATCGCTCG-TTTCTTAA-AAGCCG 178
Query 137 GCAAGTACG-CAACACGTGTTGGTGCCGGAGCTCCGGTCTACT-TAGCCGCTGTTCTCGA 194
| || |||| | | ||||||||||||||| |||||||| || | | ||||| ||||||||
Sbjct 179 GTAAATACGCCGA-ACGTGTTGGTGCCGGTGCTCCGGTTTA-TCTCGCCGCCGTTCTCGA 236
Query 195 ATACCTCGCCGCTGAGGTACTGGAGTTGGCTGGAAACGCAGCGAGGGATAACAAGAAGAC 254
||| | ||||| ||||| || || || |||||||||||||| || || |||||||||||
Sbjct 237 ATATTTGGCCGCCGAGGTTCTTGAATTAGCTGGAAACGCAGCAAGAGACAACAAGAAGAC 296
Query 255 TA-GGATTGTGCCACGTCACATTCAGCTCGCGGTGAGGAATGATGAGGAGCTGAGTAAG- 312
| | ||||| || |||||||||||||| ||||| || || ||||||||||| || |||
Sbjct 297 -ACGTATTGTTCCTCGTCACATTCAGCTTGCGGTCAGAAACGATGAGGAGCTAAGCAAGC 355
Query 313 TTGCTTGGAGATGTGACGATTGCTAATGGAGGTGTGATGCCTAACATTCACAGTCTTCTT 372
|| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||
Sbjct 356 TT-CTTGGAGATGTGACGATTGCTAATGGAGGAGTGATGCCTAACATCCACAATCTCCTT 414
Query 373 CTTCCC-AAGAAGGCTGGTGCTTCCAAA-CCT 402
|| ||| ||||||||||||||||| ||| |||
Sbjct 415 CT-CCCTAAGAAGGCTGGTGCTTC-AAAGCCT 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20961651333
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5