BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930018
Length=1136
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20705.1 | Symbols: | pseudogene, hypothetical protein | ch... 656 0.0
AT3G20690.1 | Symbols: | F-box and associated interaction doma... 499 2e-140
AT3G20700.1 | Symbols: | F-box associated ubiquitination effec... 453 2e-126
AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7... 440 1e-122
AT3G17320.1 | Symbols: | F-box and associated interaction doma... 69.4 7e-11
AT3G49980.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 52.8 7e-06
> AT3G20705.1 | Symbols: | pseudogene, hypothetical protein |
chr3:7235948-7237084 REVERSE LENGTH=1137
Length=1137
Score = 656 bits (355), Expect = 0.0
Identities = 904/1153 (78%), Gaps = 101/1153 (9%)
Strand=Plus/Plus
Query 25 ATGATGTCCAATCTTCCACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTT-CCGTTGAC 83
|||||||| ||||||||| ||||||||| ||||||||||||||||||||| | | ||||
Sbjct 1 ATGATGTCAAATCTTCCAAATGATTTGGTTGAGGAGATTCTCTCTAGGGTTACTG-TGAC 59
Query 84 ATCTT-TGA-AATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTTTAACCAAATATCAG 141
| || ||| || |||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 60 GT-TTATGAGAA-CAGTGCGATCTATTTGCAAAAAGTGGAACGCTTTAACCAAAGAT-AG 116
Query 142 -AGTTTTACAAATAAGCACATCCGCAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCTGA 199
|| |||||||||||| ||||||||||| |||| | || ||||||||||||||||||||
Sbjct 117 GAGCTTTACAAATAAGTACATCCGCAATATAGCC-GCATTAGGGGAAAGAGAGTTTCTGA 175
Query 200 TCATGATCATGGAGTATAG-AGCTTATTTGATTGGCGTCAATCTCCATGGAATTCAAAAC 258
| ||||| ||| | ||| | ||||||| | ||||||||||||||||| |||||||||
Sbjct 176 T---GATCAAGGAATTTAGTAT-TTATTTGGTAGGCGTCAATCTCCATGGTATTCAAAAC 231
Query 259 AACAACATTGATCTATCTATA-AAGCAAAAAGGTAAACTTATCAGCCTAGACTATTCAGA 317
|||||| ||||||| |||||| || | |||||||||||||| ||| | ||| || || |
Sbjct 232 AACAACTTTGATCTCTCTATAGAA-CTTAAAGGTAAACTTATTAGCATGGACAATACA-A 289
Query 318 T--GAAGAATATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTAT-T 374
| | ||| | | ||| |||||| | ||||||||||| |||| ||||| |||| |
Sbjct 290 TTCGGAGATTCT-GTATATCTCAA----A--TCTTTCACTGCAATGGCTTATTTTTATGT 342
Query 375 CGT---A-AAC--GCCACG-A-----G-CTTAGTGGTTTGGAACCCGTATCGGGGGAAAC 421
|| | || | || | | | ||| |||||||||||||||||| | |||||
Sbjct 343 -GTTTCACAAAAAGACATGGATAATAGGCTT-GTGGTTTGGAACCCGTATTGTTCGAAAC 400
Query 422 CAAAATACATCAAACGCGGGTATG-TGC-A--ACTAG--GA-ATGTTCGCTTTCGGATAC 474
||| || ||||||| | | ||| | | || || || | ||| ||| |||||||
Sbjct 401 CAAGATGGATCAAACCCAGTTATAATTATAGGAC-AGTTGACAGGTTTGCTCTCGGATAT 459
Query 475 GACAAATCCTGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTACCTAAATAACATC 534
|||||||| || |||||||||||||| ||||||||||| ||| || ||||||||||| ||
Sbjct 460 GACAAATCATGTGGTAGCCACAAAATCTTGAGGCTTTTTGGTGATAACCTAAATAACCTC 519
Query 535 GAAATCTATGATTTGAGCTCTAATTCATGGATGGTTCCGAGTGGCAATCTTGAATGGGGT 594
|||||||| ||||||||||| |||||||||| |||||| | || || ||||||| ||| |
Sbjct 520 GAAATCTACGATTTGAGCTCGAATTCATGGAGGGTTCCTAATGTCACTCTTGAACGGGAT 579
Query 595 AT-GATGTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGTA-AGG 652
|| | | ||||||| | ||||||||||||||| | ||| |||||||||| || || ||
Sbjct 580 ATAG-TATATATGCAACCTGGCGTGTCTTTGAAAGAAAAGACTTACTGGTATGCTAGAG- 637
Query 653 ATAAGGAATCAGTAGATT-ATCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTTTGGA 711
|||| ||||||| | ||| || | || | | ||||||||||||||||||||| ||||||
Sbjct 638 ATAAAGAATCAGAAAATTGAT-ACTTGTTTTATTTTGATTTTACAAGAGAGAGATTTGGA 696
Query 712 CCGCGTCTGC-TTCTGCCCATCAAAGGATTTG-ATG--G-GTCTCTATCTGCAGTTAAAG 766
|||||||||| || ||||| ||| | ||||| ||| | ||||||||||| || ||||
Sbjct 697 CCGCGTCTGCCTT-TGCCCTTCAT-GAATTTGGATGATGTGTCTCTATCTGTGGTCAAAG 754
Query 767 AAGAGCAGCTAGC-AGTGTTAATTAA-GCGGTATGATATATCTGCGATAGAGATTTGGGT 824
||||| |||| || | ||||| |||| ||||| |||| || || | | |||||||||||
Sbjct 755 AAGAGAAGCTTGCGA-TGTTA-TTAAAGCGGTGGGATACATGTGAGGTGGAGATTTGGGT 812
Query 825 TACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTGATATGAA 884
||| ||||||||||||| |||| ||||||||| || ||||||||| ||| ||| ||
Sbjct 813 GACGGACAAGATTGAGCCCGATG---TGTCGTGGAGCAAGTTCTTAAAAGTTGGTATTAA 869
Query 885 -CCTATGTGATT-ATGCTGCGAATTTC-T--TGATTGACGAGGAGATA-AAAGTCGCAGT 938
|| | || || || ||| |||||| | ||||||| | || || | ||||||||| |
Sbjct 870 ACC-ACGTT-TTGATTTTGCAAATTTCGTCGTGATTGATGTGGTGA-AGAAAGTCGCATT 926
Query 939 GGTTTTTGATACAGTCAGGGCATGGGGGAGTCCTAAACTCACACTCACTTACACCGACAT 998
||||||||||| | || |||| | | ||| | || | ||| | | ||| ||||
Sbjct 927 GGTTTTTGATAAAAACAAGGCA-GAGA-AGTT-TCAA-T-ACAGT---T-ACA---ACAT 974
Query 999 AGCTTACATCATTGGAGAGAATGGTTGTTTTAGAAGA-GTGGATCTCCGTAAATCTCGAT 1057
|||||||||||| |||||||| |||| || |||| || ||||||||| || |||||| ||
Sbjct 975 AGCTTACATCATCGGAGAGAAAGGTTATTGTAGA-GAAGTGGATCTCGGTGAATCTCCAT 1033
Query 1058 ACCCATCACCTCGTCC-A-CTTGCTTGCTCTTATGTTCCAAGTT-CTGTGCAAATCAAGT 1114
|| | ||| | ||| | ||||| ||||||||||||||||||| | |||||| || |||
Sbjct 1034 ACACGCCACTT--TCCTATCTTGCGTGCTCTTATGTTCCAAGTTAC-GTGCAACTCGAGT 1090
Query 1115 AAAACAAGATTAT 1127
||| || ||||||
Sbjct 1091 AAACCA-GATTAT 1102
> AT3G20690.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7231570-7232682 REVERSE LENGTH=1113
Length=1113
Score = 499 bits (270), Expect = 2e-140
Identities = 875/1150 (76%), Gaps = 110/1150 (10%)
Strand=Plus/Plus
Query 22 ATGATGATGTCCAATCTTCCACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTTG 81
|||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGATGATGTCCGATCTTCCACATGATTTGGTGGAGGAGATTCTCTCTAGGCTTCCGTTG 60
Query 82 ACATCTTTGAAATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTT-TAACCAAATATCA 140
| |||||| ||| || |||||||||||||||||| ||||||| || || ||||| |||
Sbjct 61 ATATCTTTAAAAGCAATGCGATCTACTTGCAAAACCTGGAACG-TTCTATCCAAACATCG 119
Query 141 GAGTTTTACAAATAAGCACATCCGCAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCTGA 199
||| ||| |||||||||||||| |||||||| | | ||||||| ||||||| ||| ||
Sbjct 120 GAGCTTTGCAAATAAGCACATCGGCAATGTAACC-GCATCAGGGAAAAGAGA-TTT--GA 175
Query 200 TCATGATCATGGAGTATAGAGCTT-ATTTGATTGGCGTCAATCTCCATGGAATTCA-AA- 256
| ||||| | || | || || || ||| |||||||||||||||||||| ||||| ||
Sbjct 176 TAATGATTAAAGATTGTA-AGGTTTATTCAATTGGCGTCAATCTCCATGGTATTCAGAAC 234
Query 257 A-CAACAACATT---GATCTATCTATAAAGCAA-AAAGGTAAACTTATCAGCCTAGACTA 311
| |||||||||| ||||||||||||||| || ||||||| ||| || |||||| |
Sbjct 235 AACAACAACATTATTGATCTATCTATAAAG-AATAAAGGTATTCTT--CA-CCTAGAAAA 290
Query 312 TTCAGATG-AAGAAT-ATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTG 369
|| |||| || | | | | | || |||| | |||||||||||| | |||||||||
Sbjct 291 TTTAGATCTAATATTCAAGGAA-AT---ATTCA-ATGTCTTTCACTGCAACGGTTTATTG 345
Query 370 TTATT---CGTAAACGCCAC-GA-GCT--TAGT-GG-TT-TGG-----AACCCGTATCGG 414
|| || || || | ||| || | | || | || || ||| ||||||||| ||
Sbjct 346 TTGTTATACGGAAGCATCACTGATGATAGTATTAGGCTTGTGGTTTGTAACCCGTATTGG 405
Query 415 GGGAAACCAAAATACATCAAACGCGGG--TA-TGT-GCAACTAG-GA-ATG-TTCGCTTT 467
||||||| ||| |||||||| || | | |||| | || | || |||||
Sbjct 406 GGGAAACGTGAATGGGTCAAACGCATAAATAATTTTGCAAGTTTTGACAAACTT-GCTTT 464
Query 468 CGGATACGACAAATCCTGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCA-TTACC-TA 525
||||||||||||||| || ||| |||||||||| || ||| |||||| | | ||||| ||
Sbjct 465 CGGATACGACAAATCTTGTGGTTGCCACAAAATCTTAAGGGTTTTCGAT-AGTTACCCTA 523
Query 526 AATA-ACATCGAAATCTATGATTTGAGCTCTAATTCATGGATGGTTCCGAGTGGCAATCT 584
| || || | |||||||| ||||||| ||||||||| |||||||| | ||| | |||
Sbjct 524 A-TAGACTT-GAAATCTACAATTTGAGGTCTAATTCACGGATGGTTTCTAGTTTCCCTCT 581
Query 585 TGAATGGGGTAT-GATGTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGT 643
| |||||| ||| | || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 582 TAAATGGGATATAGC-GTTTATGCAAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGT 640
Query 644 GTGGTAAGGATA-AGGAATCAGTAGATTATCATTTACTCTGTTTTGATTTTACAAGAGAG 702
|| ||| |||| | || |||| ||||| | ||||| | || ||||||||||| ||||||
Sbjct 641 ATGCTAAAGATAGAAGA-TCAGAAGATTGTTATTTAATATGCTTTGATTTTACTAGAGAG 699
Query 703 AGGTTTGGACCGCGTCTGCTTCTGCC-CA----T-CAAAG--GA-TTTGATGGGTC-TCT 752
|| || ||||||||||||| ||| || || | || | || ||| |||| |||
Sbjct 700 AGATTCGGACCGCGTCTGCCTCTACCTCAACCCTTCATCGATGAATTTT-TGGGGAGTCT 758
Query 753 ATCTGCAGTTAA-AGAAGAGCAGCTAGCAGTGTTAATTAAGCGGTAT-GA--T---ATAT 805
|| || || || ||||||| |||| || |||||| | ||||||| | | | ||
Sbjct 759 ATATGTGGT-AAGAGAAGAGAAGCTTGCGGTGTTAGTAAAGCGGTGGCGGGGTGGCAAAT 817
Query 806 CTGCGATAGAGATTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCT 865
||| ||| || |||||||||||||||||||||||||| |||| || ||||||| || |
Sbjct 818 CTGAGATCGATATTTGGGTTACGAACAAGATTGAGCCCGATGAAGTCTCGTGGAGCAAGT 877
Query 866 TCTTAAAATTTGATATGA-ACCTATG-TGATTA-TG-CTGCGA-ATTTCTTGATTGACGA 920
|||||||| |||||| | ||| | | | || || ||| | || ||||||| | ||
Sbjct 878 TCTTAAAAGTTGATAACACACCAA-GATTTTTTCTGACTGAGGGATA-CTTGATTTATGA 935
Query 921 GGA-GATAAAAGTCGCAGTGGTTTTTGATACAGTCAGG-G-CATG-GGGGAGTCCTAAAC 976
|| || ||| |||| |||| ||||| ||| || ||| | || | |||| || |||
Sbjct 936 TGAAGAGAAA-GTCGTAGTGTTTTTTAATAAAG--AGGAGACA-GAGGGGC-TC--AAA- 987
Query 977 TCACACTCACTTACACCGACATAGCTTACATCATTGGAGAGAATGGTTGTTTTAGAAGAG 1036
|| |||| | | | |||||||||||||| ||||||||||||||| ||| |||||||
Sbjct 988 TC-CACTG--T--C-C--ACATAGCTTACATCGTTGGAGAGAATGGTTATTTCAGAAGAG 1039
Query 1037 TGGATCTCCGTAAATCTCGATACCCATCACCTCGTCCA-CTTGCT-TGCTCTTATGTTCC 1094
|||||||||| || ||| ||| | | ||| | | || |||| | ||||||||||| ||
Sbjct 1040 CGGATCTCCGTGAACCTCTATATCAACCACTTTG-CCGTCTTG-TGTGCTCTTATGTACC 1097
Query 1095 AAGTTCTGTG 1104
||||||||||
Sbjct 1098 AAGTTCTGTG 1107
> AT3G20700.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:7233525-7234505 REVERSE LENGTH=981
Length=981
Score = 453 bits (245), Expect = 2e-126
Identities = 692/897 (77%), Gaps = 74/897 (8%)
Strand=Plus/Plus
Query 257 ACAACAACATTGATCTATCTATAAAGCAAAAAGGTAAACTTATCAGCCTAGACTATTCAG 316
|||||||||||||||||||||||||| | ||||| |||||| ||| |||| | |||
Sbjct 122 ACAACAACATTGATCTATCTATAAAGTGTAGAGGTAGACTTATTAGCAGAGACGAAACAG 181
Query 317 ATGAAGAATATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTA---- 372
| | | || || | || | ||||| |||||||||||| ||||||||||||||
Sbjct 182 CTCAGGGAT-TC-T--ATGT--GTCTCAAGTCTTTCACTGCAATGGTTTATTGTTATCCG 235
Query 373 T-TC--G-TAAAC-------GCCACGA-GCTTAGTGGTTTGGAACCCGTATCGGGG-GAA 419
| || | |||| | ||| | |||| |||||||| ||||||||| |||| ||
Sbjct 236 TATCAGGAAAAACTATTGATGACACTAGGCTT-GTGGTTTGTAACCCGTAT-GGGGTAAA 293
Query 420 ACCAAAATACATCAAACGC--GGGT-A-T--GTGCA-ACTAGGA-ATGTTCGCTTTCGGA 471
|||||||| ||||| | | | | | | | | | | || || || || || |||||
Sbjct 294 ACCAAAATGGATCAATCCCAAAGATAATTACG-GGAGATTA-GACATATTTTCTCTCGGA 351
Query 472 TACGACAAATCCTGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTACCTA-AAT-A 529
| ||||||| ||||||||| ||||||| |||||| ||| | | ||| | | ||| |
Sbjct 352 TTTGACAAATTATGCGGTAGCTACAAAATCTTGAGGATTTAC-G--ATT-TCGATAATAA 407
Query 530 ACATCGAAATCTATGATTTGAGCTCTAATTCATGGATGGTTCCGAGTGGCAATCTTGAAT 589
|| || ||||||| |||||||||||||||||||||||| |||| || | || ||||| |
Sbjct 408 AC-TCCAAATCTACGATTTGAGCTCTAATTCATGGATGATTCCAAGAGACACTCTTGGAC 466
Query 590 GGGGTAT-GATGTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGT 648
||| ||| || |||||||| | |||||||||||| |||| ||||||||| ||||||| |
Sbjct 467 GGGATATAGA-GTATATGCAAAATGGCGTGTCTTCCAAGGAAAATACTTATTGGTGTGCT 525
Query 649 AAG-GATAAGGAATCAGTAGATTATCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTT 707
|| ||||| ||||| | ||| | ||| ||||||||||||||||||| ||||| ||
Sbjct 526 -AGAGATAAACAATCACAATATTGTTTTTTGTTCTGTTTTGATTTTACAAGGGAGAGATT 584
Query 708 TGGACCGCGTCTGCTTCTGCCCATCAAAGGA-TTTGATGGGTCTCTATCTGCAGTTAAAG 766
||||||||||| | |||||| |||| ||| || ||| |||||||||||| |||||||
Sbjct 585 CGGACCGCGTCTACCACTGCCCTTCAATGGAGCTT-ATGTGTCTCTATCTGCGGTTAAAG 643
Query 767 AAGAGCAGCTAGCAGTGTTAATTAAGCGGTATGATATATCTGCGATAGAGATTTGGGTTA 826
|||||||||| ||||||||| || ||| | |||| ||||| |||||||||||||||||
Sbjct 644 AAGAGCAGCTTGCAGTGTTATTTCAGCCATCGGATAAATCTGAGATAGAGATTTGGGTTA 703
Query 827 CGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTGATATGAACC 886
||||||||||||||||||| | |||||||||| | ||||||| ||| |||| ||||| |
Sbjct 704 CGAACAAGATTGAGCCTGAAGAAGTGTCGTGGAGCGTCTTCTTGAAAGTTGAAATGAAAC 763
Query 887 TATGTGATTATG-CT-GCGAATTTCTTGATTGACGAGGAGATA-AAAGTCGCAGTGGTTT 943
|| ||| || || || | |||||||||||||||| |||| | | ||| ||||||| ||||
Sbjct 764 TACGTG-TTCTGTCTTG-GAATTTCTTGATTGACAAGGAAA-AGAAATTCGCAGTTGTTT 820
Query 944 TTGATACAGTCAGGGCATGGGGGAGTCCTAAACTCACACTCACTTACACCGACATAGCTT 1003
|||||| || || |||| |||| | |||| | || | |||| ||||||||||
Sbjct 821 TTGATAAAGACAAGGCAAAGGGGT-T--TAAAA-C-CA---A-TTAC---GACATAGCTT 868
Query 1004 ACATCATTGGAGAGAATGGTTGTTTTAGAAGAGTGGATCTCCGTAAATCTCGATACCCAT 1063
|| |||||||||| ||||||| || |||||||||||||||||| |||||| | || |
Sbjct 869 ACGTCATTGGAGAAAATGGTTATTACAGAAGAGTGGATCTCCGTGAATCTCCAAACAAAC 928
Query 1064 CACCTCGTCC--ACT-TG-CTTGCTCTTATGTTCCAAGTTCTGTGCAAATCAAGTAA 1116
||| | | || | | || |||| | | |||||||||||| |||||||||| |||||
Sbjct 929 CACTTTG-CCGTATTGTGTCTTG-T-T-ATGTTCCAAGTTGTGTGCAAATCGAGTAA 981
> AT3G20710.1 | Symbols: | F-box family protein | chr3:7237911-7238999
REVERSE LENGTH=1089
Length=1089
Score = 440 bits (238), Expect = 1e-122
Identities = 854/1133 (75%), Gaps = 116/1133 (10%)
Strand=Plus/Plus
Query 22 ATGATGATGTCCAATCTTCC-ACGTGATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTT 80
||||||||||| |||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATGATGTCAAATCTTCCAAAG-GATTTGGTGGAGGAGATTCTCTCTAGGGTTCCGTT 59
Query 81 GACAT-CTTTGAAATCAGTGCGATCTACTTGCAAAAAGTGGAACGCTTTAACCAAATATC 139
| || | | || | || | ||||||||||||||||| ||| ||| |||| | ||| |||
Sbjct 60 TAAATACCT-GAGAGCAATACGATCTACTTGCAAAAATTGGTACGATTTATCAAAAAATC 118
Query 140 AGAGTTTTACAAATAAGCACATCCG-CAATGTAGCAAG-ATCAGGGGAAAGAGAGTTTCT 197
||| ||| | |||||| ||||| | ||| | ||| | ||||||||||| |||||||||
Sbjct 119 GGAGCTTTGCGAATAAGAACATC-GACAAAGCAGCG-GTATCAGGGGAAAAAGAGTTTCT 176
Query 198 GATCATGATCATGGAGTATAGA-GCTTATTTGATT-GGCGTCAATCTCCATGGAATTCAA 255
||| || | || | | || | | || |||| | ||||||||||||||| ||| |||
Sbjct 177 GATGATCA-CACA-ATT-TA-ATGTTT-TTTGGGTCGGCGTCAATCTCCATAGAAGTCAG 231
Query 256 AACAACAACATTGATCTATCTATAAAGCAAAAAGG-TAAACTTATCAGCCTAGACTATTC 314
||||||| | ||||||||||||| ||| || || |||| || | ||| |||| |
Sbjct 232 AACAACAGCTTTGATCTATCTATTCAGCTTAA-GGCTAAAATTGTTAGCAGAGACAAAAA 290
Query 315 AGATGAAGAATATCGTACATCTCATTCTCAGGTCTTTCACTGCCATGGTTTATTGTTATT 374
|||||| || || | | || |||| ||| |||||||| | ||| |||| ||||
Sbjct 291 AGATGATTTAT-TCCAAAA----AT-CTCAAGTCATTCACTGCAACGGTGTATTTTTATG 344
Query 375 CGTAAACGCCACGA-GCTTAGTGGTTTGGAACCCGTATCGGGGG-AAACCAAA---ATAC 429
|||| | | | |||| ||||||| |||||||||| |||| |||| ||| || |
Sbjct 345 CGTACGGGAAAAAATGCTT-GTGGTTTTGAACCCGTATTGGGGACAAACAAAACGGAT-C 402
Query 430 AT-C-AA-ACGCGGGTAT-GTGCAACTAGGA-ATGT-TCGCTTTCGGATACGACAAATCC 483
|| | || || | | | | | || || | || | ||| |||||||||||||||||
Sbjct 403 ATGCCAAGAC-CTCCTTTCGGGTG-CTTCGACAGGTAT-GCTCTCGGATACGACAAATCC 459
Query 484 TGCGGTAGCCACAAAATATTGAGGCTTTTCGGTCATTA-CCTAAATAACATCGAA-ATCT 541
|||||||||||||||| |||||||||||||| | | || ||||||| || || ||||
Sbjct 460 AGCGGTAGCCACAAAATCCTGAGGCTTTTCGGTG-TCAACCAAAATAACCTC-AATATCT 517
Query 542 ATGATTTGAGCTCTAATTCATGGATGGTTCC-GAGTGGCAATCTTGAATGGGGTATG-AT 599
| ||||||||||||| |||||||||| |||| || ||||| ||||||| | | |||| |
Sbjct 518 ACGATTTGAGCTCTAGTTCATGGATGATTCCTGA-TGGCACTCTTGAACGAGATATGGA- 575
Query 600 GTATATGCGAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTGTGGTAAGGATAAGGA 659
||||||| | | |||||||||||||| ||| |||||||||||| || ||| ||||||||
Sbjct 576 GTATATGAAACAAGGCGTGTCTTTGAATGGAGATACTTACTGGTATGCTAAAGATAAGGA 635
Query 660 ATCAGTAGATTA-TCATTTACTCTGTTTTGATTTTACAAGAGAGAGGTTTGGACCGCGTC 718
|||| |||| | | | ||| | ||||||||||||||||||||||| |||||| | | ||
Sbjct 636 ATCAATAGACTGGT-ACTTATTATGTTTTGATTTTACAAGAGAGAGATTTGGAACACCTC 694
Query 719 TGCTTCTGCCC---A-TCA--AAGG--AT--T-TG-AT---GG------GTCTCTATCTG 757
||| ||||||| | | | |||| || | | | || |||||||||||
Sbjct 695 TGCCTCTGCCCTTTAGTAATGAAGGTTATACTCTACACAAAGGTTATAAGTCTCTATCTG 754
Query 758 CAGTTAAAGAAGAGCAGCTAGCAGTGTTAATTAAGCGGTATGATATATCTGCGATAGAGA 817
| ||||||||||| |||| || |||||| | | | || || | | || | | ||
Sbjct 755 CTCTTAAAGAAGAGAAGCTTGCGGTGTTACT-ATG-GG-AT-ACA-AT--G-GTTA---- 802
Query 818 TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAACATCTTCTTAAAATTTG 877
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 803 TTTGGGTTACGAACAAGATTGAGCCTGATGCGGTGTCGTGGAGCATCTTCTTAAAACTTG 862
Query 878 ATATG-AACC---TATGTGATTAT-GCT--GCGAATTTCTTGATTGACGAGGAGATA-AA 929
||||| |||| ||| | ||| | ||| | ||||||||| ||||||||||| | | ||
Sbjct 863 ATATGGAACCAAGTATTT-ATTGTCGCTATGGGAATTTCTTCATTGACGAGGAAA-AGAA 920
Query 930 AGTCGCAGTGGTTTTTGATACAGTCAGG--G-CATGGG---GGA-GTCCTAAACTCACAC 982
||||||||| || ||||| | || ||| | ||||| ||| || ||| | | ||
Sbjct 921 AGTCGCAGTTGTGTTTGAGAAAGACAGCTCGTCATGGTCATGGATGTA-TAACC-C-CA- 976
Query 983 TCACTTACACCGACATAGCTTACATCAT-TGGAGAGAATGGTTGTTTTAGAAGAGTGGAT 1041
| ||||| | | | ||||||||| | |||||||||||||| ||| | ||| ||| ||
Sbjct 977 --A-TTACAAC-A-A-AGCTTACAT-AGCTGGAGAGAATGGTTATTTCAAAAGTGTGAAT 1029
Query 1042 CTCCGTAAATCTCGATACCCA-T-CACCTCGTCCA-CTTGCT-TGCTCTTATG 1090
|| | |||||||| | || || | || || | ||| |||| | ||||| ||||
Sbjct 1030 CTTCTTAAATCTCCAAACACACTACAGCTTGGCCATCTTG-TGTGCTCATATG 1081
> AT3G17320.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5915427-5916656 REVERSE LENGTH=1230
Length=1230
Score = 69.4 bits (37), Expect = 7e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 1071 TCCACTTGCTTGCTCTTATGTTCCAAGTTCTGTGCAAATC 1110
||||||||| ||||||||||||||||||||||||||||||
Sbjct 1188 TCCACTTGCGTGCTCTTATGTTCCAAGTTCTGTGCAAATC 1227
> AT3G49980.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18530329-18531477 REVERSE LENGTH=1149
Length=1149
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 614 GCGTGTCTTTGAAGGGAAATACTTACTGGT 643
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Sbjct 608 GCGTGTCTTTGAAGGGAAATACTTACTGGT 637
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 52.8 bits (28), Expect = 7e-06
Identities = 31/32 (97%), Gaps = 1/32 (3%)
Strand=Plus/Plus
Query 616 GTGTCTTTGAAGGGAAATACTTACTGGTGTGG 647
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Sbjct 1819 GTGTCTTTGAAGGGAAATACTTACTGGT-TGG 1849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55722604950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5