BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930021
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20740.1 | Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat... 1936 0.0
AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 135 7e-31
> AT3G20740.1 | Symbols: FIE, FIS3, FIE1 | Transducin/WD40 repeat-like
superfamily protein | chr3:7248809-7252452 REVERSE LENGTH=1563
Length=1563
Score = 1936 bits (1048), Expect = 0.0
Identities = 1121/1156 (97%), Gaps = 5/1156 (0%)
Strand=Plus/Plus
Query 2 AGAGAGAGA-ATTTCG-A-GT-G-ATGTCGAAGATAACGTTAGGGAACGAGTCAATTGTT 56
||||||||| |||||| | | | |||||||||||||| ||||||||||||||||| |||
Sbjct 175 AGAGAGAGAGATTTCGAATATCGAATGTCGAAGATAACCTTAGGGAACGAGTCAATAGTT 234
Query 57 GGGTCTTTGACTCCATCGAACAAGAAATCGTACAAAGTGACGAATAGGATTCAAGAAGGG 116
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 235 GGGTCTTTGACTCCATCGAATAAGAAATCGTACAAAGTGACGAATAGGATTCAGGAAGGG 294
Query 117 AAGAAACCTTTGTATGCTGTTGTTTTCAACTTCCTTGATGCTCGTTTCTTCGATGTCTTC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 AAGAAACCTTTGTATGCTGTTGTTTTCAACTTCCTTGATGCTCGTTTCTTCGATGTCTTC 354
Query 177 GTTACCGCTGGTGGTAATCGGATTACTCTGTACAATTGTCTCGGAGATGGTGCCATATCA 236
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 GTTACCGCTGGTGGAAATCGGATTACTCTGTACAATTGTCTCGGAGATGGTGCCATATCA 414
Query 237 GCATTGCAATCCTATGCTGATGAAGATAAGGAAGAGTCGTTTTACACTGTAAGTTGGGCG 296
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 415 GCATTGCAATCCTATGCTGATGAAGATAAGGAAGAGTCGTTTTACACGGTAAGTTGGGCG 474
Query 297 TGTGGCGTTAATGGGAACCCATATGTTGCGGCTGGAGGAGTAAAAGGCATAATCCGAGTC 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 TGTGGCGTTAATGGGAACCCATATGTTGCGGCTGGAGGAGTAAAAGGTATAATCCGAGTC 534
Query 357 ATTGACGTCAACAGTGAAACGATTCATAAGAGTCTTGTGGGTCATGGAGATTCAGTGAAC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 ATTGACGTCAACAGTGAAACGATTCATAAGAGTCTTGTGGGTCATGGAGATTCAGTGAAC 594
Query 417 GAAATCAGGACACAACCTTTGAAACCTCAACTTGTGATTACTGCTAGCAAGGATGAATCT 476
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 595 GAAATCAGGACACAACCTTTAAAACCTCAACTTGTGATTACTGCTAGCAAGGATGAATCT 654
Query 477 GTTCGTTTGTGGAATGTTGAAACTGGGATATGTATTCTGATATTTGCTGGAGCTGGAGGT 536
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 655 GTTCGTTTGTGGAATGTTGAAACTGGGATATGTATTTTGATATTTGCTGGAGCTGGAGGT 714
Query 537 CATCGCTATGAAGTTCTAAGTGTGGATTTTCATCCTTCTGATATTTACCGTTTTGCTAGT 596
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 715 CATCGCTATGAAGTTCTAAGTGTGGATTTTCATCCGTCTGATATTTACCGCTTTGCTAGT 774
Query 597 TGTGGTATGGACACCACTATTAAAATATGGTCGATGAAAGAGTTTTGGACATACGTCGAG 656
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 775 TGTGGTATGGACACCACTATTAAAATATGGTCAATGAAAGAGTTTTGGACGTACGTCGAG 834
Query 657 AAGTCATTCACATGGACTGATGATCCATCAAAATTCCCCACAAAATTTGTCCAATTTCCT 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 835 AAGTCATTCACATGGACTGATGATCCATCAAAATTCCCCACAAAATTTGTCCAATTCCCT 894
Query 717 GTATTTACAGCTTCGGTTCATACAAATTATGTAGATTGTAACCGTTGGTTTGGTGATTTT 776
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTATTTACAGCTTCCATTCATACAAATTATGTAGATTGTAACCGTTGGTTTGGTGATTTT 954
Query 777 ATCCTCTCAAAGAGTGTGGACAACGAGATTCTGTTGTGGGAACCACAACTGAAAGAGAAT 836
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 955 ATCCTCTCAAAGAGTGTGGACAACGAGATCCTGTTGTGGGAACCACAACTGAAAGAGAAT 1014
Query 837 TCTCCAGGAGAGGGAGCTTCAGATGTTCTATTAAGATACCCGGTTCCAATGTGTGATATT 896
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TCTCCTGGCGAGGGAGCTTCAGATGTTCTATTAAGATACCCGGTTCCAATGTGTGATATT 1074
Query 897 TGGTTTATCAAGTTTTCTTGTGACCTCCATTTAAGTTCTGTTGCTATAGGTAATCAGGAC 956
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1075 TGGTTTATCAAGTTTTCTTGTGACCTCCATTTAAGTTCTGTTGCGATAGGTAATCAGGAA 1134
Query 957 GGAAAGATTTATGTCTGGGATTTAAAAAGTTGCCCTCCTGTTTTGATTACAAAGTTATCA 1016
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1135 GGAAAGGTTTATGTCTGGGATTTGAAAAGTTGCCCTCCTGTTTTGATTACAAAGTTATCA 1194
Query 1017 CACAATCAATCGAAGTCTGTAATCAGGCAAACCGCCATGTCTGTCGATGGAAGCACAATT 1076
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1195 CACAATCAATCAAAGTCTGTAATCAGGCAAACAGCCATGTCTGTCGATGGAAGCACGATT 1254
Query 1077 CTTGCTTGCTGTGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAGTAGTGGTCT 1136
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1255 CTTGCTTGCTGCGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAGTAGCGGTCT 1314
Query 1137 GGGTCTTGTAGGAATT 1152
| ||||||||||||||
Sbjct 1315 GAGTCTTGTAGGAATT 1330
> AT3G20730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:7247095-7249145 FORWARD LENGTH=1962
Length=1962
Score = 135 bits (73), Expect = 7e-31
Identities = 81/85 (95%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1068 AGCACAATTCTTGCTTGCTGTGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAG 1127
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1943 AGCACGATTCTTGCTTGCTGCGAGGACGGGACTATATGGCGCTGGGACGTGATTACCAAG 1884
Query 1128 TAGTGGTCTGGGTCTTGTAGGAATT 1152
||| |||||| ||||||||||||||
Sbjct 1883 TAGCGGTCTGAGTCTTGTAGGAATT 1859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5