BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930031

Length=245
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G28320.1 | Symbols: DEG15 | protease-related | chr1:9920507-...   333    4e-91


> AT1G28320.1 | Symbols: DEG15 | protease-related | chr1:9920507-9924488 
REVERSE LENGTH=2437
Length=2437

 Score =  333 bits (180),  Expect = 4e-91
 Identities = 225/246 (91%), Gaps = 6/246 (2%)
 Strand=Plus/Plus

Query  1     CTCTCATCCATTTGGGCTTTGATGCCATCACTGCTATCACCAAAGACTGAGCAGCCTCTA  60
             ||||||||||||||||||||||||||||||   ||||||||||||||||||||| |||||
Sbjct  2074  CTCTCATCCATTTGGGCTTTGATGCCATCA---CTATCACCAAAGACTGAGCAGTCTCTA  2130

Query  61    TCCAATCTGCCTAAGTTACTCAAAGATGGTAATAACAAACAAAAGAAAGGATCTCAGTTT  120
              |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  2131  CCCAATCTGCCTAAGTTACTCAAAGATGGTAATAACAAACAAACGAAAGGATCTCAGTTT  2190

Query  121   GCCAAGTTTATTGCAGAGACCAAAGACAAGTTTGTAAACCCGACCAAGCTTGCCCGAGAT  180
             |||||||| |||||||||||| |||||| ||||||||| |||||||||||| |||| |||
Sbjct  2191  GCCAAGTTCATTGCAGAGACCCAAGACATGTTTGTAAAGCCGACCAAGCTTTCCCGTGAT  2250

Query  181   GTGATCTCTAGCAAGTTATATGAGAAAATTGGCTACTTTGCATAGTTTGTGCCTTCTTTT  240
             |||||| ||||||||||||  || || ||||||| ||||||| | |||||||||||||||
Sbjct  2251  GTGATCCCTAGCAAGTTAT--GACAAGATTGGCTTCTTTGCAGAATTTGTGCCTTCTTTT  2308

Query  241   A-TCCT  245
             | ||||
Sbjct  2309  ACTCCT  2314



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11109172529


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5