BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930033
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superf... 2898 0.0
AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superf... 750 0.0
> AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superfamily
protein | chr3:7300675-7303693 FORWARD LENGTH=2137
Length=2137
Score = 2898 bits (1569), Expect = 0.0
Identities = 1696/1758 (96%), Gaps = 5/1758 (0%)
Strand=Plus/Plus
Query 1 TTTGACTCAAAAAGAAGAAAATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCAA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 70 TTTGACTCAAAAAGAAGAAAATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCGA 129
Query 61 ACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTTGGTCAGCGACCATATGGACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 ACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTTGGTCAGCGACCATATGGACA 189
Query 121 ACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGGTGAAG 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 190 ACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGATGAAG 249
Query 181 GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTTGGTGTGAGCAAACCGGACGAAAACCAAT 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 250 GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTCGGTGTGAGCAAACCGGACGAAAACCAAT 309
Query 241 CCAACCACCTAGTAGCTTACAACGACTCAGATTACTACTTCCATACCAATAGCTTGATGC 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 310 CCAACCACCTAGTAGCTTACAACGACTCAGACTACTACTTCCATACCAATAGCTTGATGC 369
Query 301 CTACCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGACTCCAACACTCCTAACAACA 360
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 370 CTAGCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGACTCCAATACTCCTAACAACA 429
Query 361 GTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTCACTTTGTCCATGG 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 430 GTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTTACTTTGTCCATGG 489
Query 421 GGACCACCGCTGGTAACAACGCTGTAGACAAAGCTTCACCGTCCGAGACCACCGGGGATA 480
|||||||||||||||| || | |||||||||||||||||| |||||||||||||||||||
Sbjct 490 GGACCACCGCTGGTAATAATGTTGTAGACAAAGCTTCACCATCCGAGACCACCGGGGATA 549
Query 481 ACACTAGCGGTGGAGTACTAGCCGTTGCTGAGACGGCCACGCCGAGACGTGCATTGGACA 540
|| |||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 550 ACGCTAGCGGTGGAGCACTAGCCGTTGTTGAGACGGCCACGCCAAGACGTGCATTGGACA 609
Query 541 CTTTCGGGCAGCGAACCTCGATCTATCGTGGTGTCACAAGACATCGATGGACGGGTCGCT 600
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 610 CTTTCGGACAACGAACCTCGATCTATCGTGGTGTCACAAGACATCGATGGACTGGTCGAT 669
Query 601 ATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 ATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC 729
Query 661 AAGTATACTTGGGTGGATATGACAAAGAAGATAAAGCCGCAAGATCATATGATCTAGCTG 720
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 730 AAGTTTACTTGGGTGGATATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCTG 789
Query 721 CACTTAAGTACTGGGGTCCTTCGACTACTACTAATTTCCCCATTACAAACTACGAGAAAG 780
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 790 CACTTAAGTACTGGGGTCCTTCAACTACTACTAATTTCCCCATTACAAACTACGAGAAAG 849
Query 781 AAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGTGGCTGCCATTAGAAGGAAAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 AAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGTGGCTGCCATTAGAAGGAAAA 909
Query 841 GTAGTGGCTTTTCCAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG 900
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 GTAGTGGATTTTCGAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG 969
Query 901 GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTT 1029
Query 961 TTAGCACTGAGGAAGAAGCAGCAGAAGCTTACGATATAGCTGCAATAAAGTTCAGAGGAC 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1030 TTAGCACTGAGGAAGAAGCAGCAGAAGCTTACGATATAGCTGCAATAAAGTTTAGAGGAC 1089
Query 1021 TTAATGCAGTGACCAACTTTGAAATCAATAGGTATGACGTCAAAGCCATCCTAGAGAGCA 1080
||||||||||||||||||| || ||||| |||| ||||| |||||||| |||||||| |
Sbjct 1090 TTAATGCAGTGACCAACTTCGAGATCAACCGGTACGACGTGAAAGCCATTCTAGAGAGTA 1149
Query 1081 GCACTCTTCCCATAGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTGGAGT 1140
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1150 GCACTCTTCCCATCGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTTGAGT 1209
Query 1141 CTTCAAGGAAACGTGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGG-GGTT 1199
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1210 CTTCAAGGAAACGCGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGGTGGT- 1268
Query 1200 GGCTCGAGCACAGGCTCTGGCTCCAGCTCATCAAGGCTTCAGCTTCAACCATACCCTCTA 1259
||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||
Sbjct 1269 GGCTCGAGCACAGGCTCTGGCTCCACCTCATCAAGACTTCAGCTTCAACCTTACCCTCTA 1328
Query 1260 AGCATTCAGCAACCTTTAGAGCCTTTTCTATCTCTTCAGAACAATGACATCTCTCATTAC 1319
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 AGCATTCAACAACCATTAGAGCCTTTTCTATCTCTTCAGAACAATGACATCTCTCATTAC 1388
Query 1320 AGCAACAACAATGCTCATGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAG 1379
| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 AACAACAACAATGCTCACGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAA 1448
Query 1380 CTTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAATCGAGCCAGAACTCGCAG 1439
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1449 CTTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAGTCGAGCCAGAACTCTCAG 1508
Query 1440 CAGCTCTACAACGCGTATCTTCATAGCAATCCGGCTCTTCTCCATGGCCTTGTCTCTACC 1499
||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 1509 CAGCTCTACAATGCGTATCTTCATAGCAATCCGGCTCTGCTTCATGGACTTGTCTCTACC 1568
Query 1500 TCTATCGTTGACAACAATAATAACAATGGAGGTTCTAGTGGGAGCTACAACACTGCAGCG 1559
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1569 TCTATCGTTGACAACAATAATAACAATGGAGGCTCTAGTGGGAGCTACAACACTGCAGCA 1628
Query 1560 TTTCTTGGGAACCACGGTATTGGTATTGGGTCGAGCTCGACTGTTGGATCTG-CTGAGGA 1618
|||||||||||||||||||||||||||||||| ||||||||||||||||| | | |||||
Sbjct 1629 TTTCTTGGGAACCACGGTATTGGTATTGGGTCCAGCTCGACTGTTGGATC-GACCGAGGA 1687
Query 1619 GTTTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAG 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 GTTTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAG 1747
Query 1679 TGGTTGGACCGGTGAGTCTGTTCAGGGGTCAAATCCTGGTGGTGTTTTCACTATGTGGAA 1738
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1748 TGGTTGGACCAGTGAGTCTGTTCAGGGGTCAAACCCTGGTGGTGTTTTCACTATGTGGAA 1807
Query 1739 TGAGTAA-CATGGATCTC 1755
||||||| || |||||||
Sbjct 1808 TGAGTAAACAAGGATCTC 1825
> AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superfamily
protein | chr1:18977284-18980618 FORWARD LENGTH=2136
Length=2136
Score = 750 bits (406), Expect = 0.0
Identities = 811/1001 (81%), Gaps = 50/1001 (5%)
Strand=Plus/Plus
Query 515 GGCCACGCCGAGACGTG-CATTGGACACTTTCGGGCAGCGAACCTCGATCTATCGTGGTG 573
||| || |||||||| | | ||||| ||||| || || |||||||| ||||||||||| |
Sbjct 638 GGCTACACCGAGACG-GACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAG 696
Query 574 TCACAAGACATCGATGGACGGGTCGCTATGAGGCTCATCTATGGGATAATAGTTGTAGAA 633
| ||||||||| ||||||| ||| | ||||| |||||||| ||||||||||| |||||||
Sbjct 697 TTACAAGACATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAA 756
Query 634 GGGAAGGCCAGTCTAGGAAAGGAAGACAAGTATACTTGGGTGGATATGACAAAGAAGATA 693
| ||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| |
Sbjct 757 GAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGA 816
Query 694 AAGCCGCAAGATCATATGATCTAGCTGCACTTAAGTACTGGGGTCCTTCGACTACTACTA 753
|||| || ||| |||||||||||||||||||||| || |||||||| || |||||||| |
Sbjct 817 AAGCAGCCAGAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCA 876
Query 754 A-TTTCCCCATTACAAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAA 812
| ||| || || || ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 877 ACTTT-CCGATAACTAACTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAA 935
Query 813 GAGTTCGTGGCTGCCATTAGAAGGAAAAGTAGTGGCTTTTC-CAGAGGCGCTTCGATGTA 871
||||| |||||| | || |||||||||||||| || || || | | || || || |||||
Sbjct 936 GAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGATTCTCGC-GTGGTGCATCCATGTA 994
Query 872 TCGAGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGC 931
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 995 TCGTGGAGTAACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGC 1054
Query 932 CGGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCAGCAGAAGCTTA 991
||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1055 TGGAAACAAAGATCTCTACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTA 1114
Query 992 CGATATAGCTGCAATAAAGTT-CAGAGGACTTAATGCAGTGACCAACTTTGAAATCAATA 1050
|| |||||||| |||||||| | |||| || || || || || |||||||| || |||
Sbjct 1115 TGACATAGCTGCGATAAAGTTTC-GAGGTCTAAACGCGGTTACAAACTTTGAGATAAATC 1173
Query 1051 GGTATGACGTCAAAGCCATCCTAGAGAGCAGCACTCTTCCCATAGGAGGAGGCGCAGCTA 1110
||||||| || ||||||||||| ||||||| ||| ||||| |||||||| || || ||||
Sbjct 1174 GGTATGATGTGAAAGCCATCCTGGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTA 1233
Query 1111 AACGGCTCAAAGAAGCTCAAGCTCTGGAGTCTTCAAGGAAACGTGAGGCGGAGATGATAG 1170
||||||||||||||||||||||||| || || ||||| ||||| |||| | |||||||
Sbjct 1234 AACGGCTCAAAGAAGCTCAAGCTCTAGAATCATCAAGAAAACGAGAGGA--A-ATGATAG 1290
Query 1171 CCCTTGGTTCAAGTTTCCAG---TACGGGGTTG-GCTCGAGCAC-AGGCTCTG--GCT-C 1222
|||| || |||| |||||| || || | | | || || | || ||||| ||| |
Sbjct 1291 CCCTCGGATCAAATTTCCATCAATATGGTGCAGCGAGCG-GCTCGAG-CTCTGTTGCTTC 1348
Query 1223 CAGCTCATCAAGGCTTCAGCTTCAACCATACCCTCTAAGCATTCAGCAACCTTTAGAGCC 1282
|||||| | | |||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1349 CAGCTC-T-A-GGCTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCTTTTGAGCA 1405
Query 1283 TTTTCTATC-TCTTCAGAACAATGACATCTCTCATTACAGCAACAACAATGCTCATGATT 1341
| ||| ||| || |||| | | || | ||| | |||| |||||||| | | || |
Sbjct 1406 TCTTC-ATCATCATCAGC-CTTT-ACTTA-CTC-T-ACAG-AACAACAACGAT-ATC-T- 1455
Query 1342 CCTCC-TCTTTTAATCACCAT-AGCTATATCCAGACACAGCTTCATCTCCACCAACAG-A 1398
| || | | | || || | || || || ||||| ||||||||||| |||||||| |
Sbjct 1456 C-TCAGTATCATGATT-CCTTTAGTTACATTCAGACGCAGCTTCATCTTCACCAACAACA 1513
Query 1399 --CCAACAATTACTTGCAGCAACAATCGAGCCAGAACTCGCAGCAGCTCTACAACGCGTA 1456
||||||||||||||||| | || || || | || || ||||||||||| || ||
Sbjct 1514 AACCAACAATTACTTGCAGT--CT-TCTAGTCACA-CTT-CA-CAGCTCTACAATGCTTA 1567
Query 1457 TCTTCATAGCAATCC-GGCTCTTCTCCATGGCCTTGTCTCT 1496
|||||| || || || || ||| || ||||| ||||||||
Sbjct 1568 TCTTCAGAGTAACCCTGG-TCTGCTTCATGGATTTGTCTCT 1607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87348948300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5