BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930033 Length=1766 Score E Sequences producing significant alignments: (Bits) Value AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superf... 2898 0.0 AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superf... 750 0.0 > AT3G20840.1 | Symbols: PLT1 | Integrase-type DNA-binding superfamily protein | chr3:7300675-7303693 FORWARD LENGTH=2137 Length=2137 Score = 2898 bits (1569), Expect = 0.0 Identities = 1696/1758 (96%), Gaps = 5/1758 (0%) Strand=Plus/Plus Query 1 TTTGACTCAAAAAGAAGAAAATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCAA 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 70 TTTGACTCAAAAAGAAGAAAATGAATTCTAACAACTGGCTTGGCTTTCCTCTTTCACCGA 129 Query 61 ACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTTGGTCAGCGACCATATGGACA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 ACAACTCTTCTTTGCCTCCTCATGAATACAACCTTGGCTTGGTCAGCGACCATATGGACA 189 Query 121 ACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGGTGAAG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 190 ACCCTTTTCAAACACAAGAGTGGAATATGATCAATCCACACGGTGGAGGAGGAGATGAAG 249 Query 181 GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTTGGTGTGAGCAAACCGGACGAAAACCAAT 240 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 250 GAGGAGAGGTTCCAAAAGTGGCCGATTTTCTCGGTGTGAGCAAACCGGACGAAAACCAAT 309 Query 241 CCAACCACCTAGTAGCTTACAACGACTCAGATTACTACTTCCATACCAATAGCTTGATGC 300 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 310 CCAACCACCTAGTAGCTTACAACGACTCAGACTACTACTTCCATACCAATAGCTTGATGC 369 Query 301 CTACCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGACTCCAACACTCCTAACAACA 360 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 370 CTAGCGTCCAATCAAACGATGTCGTTGTAGCAGCTTGTGACTCCAATACTCCTAACAACA 429 Query 361 GTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTCACTTTGTCCATGG 420 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 430 GTAGCTATCATGAGCTTCAAGAGAGTGCTCACAATCTACAGTCACTTACTTTGTCCATGG 489 Query 421 GGACCACCGCTGGTAACAACGCTGTAGACAAAGCTTCACCGTCCGAGACCACCGGGGATA 480 |||||||||||||||| || | |||||||||||||||||| ||||||||||||||||||| Sbjct 490 GGACCACCGCTGGTAATAATGTTGTAGACAAAGCTTCACCATCCGAGACCACCGGGGATA 549 Query 481 ACACTAGCGGTGGAGTACTAGCCGTTGCTGAGACGGCCACGCCGAGACGTGCATTGGACA 540 || |||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| Sbjct 550 ACGCTAGCGGTGGAGCACTAGCCGTTGTTGAGACGGCCACGCCAAGACGTGCATTGGACA 609 Query 541 CTTTCGGGCAGCGAACCTCGATCTATCGTGGTGTCACAAGACATCGATGGACGGGTCGCT 600 ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct 610 CTTTCGGACAACGAACCTCGATCTATCGTGGTGTCACAAGACATCGATGGACTGGTCGAT 669 Query 601 ATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 ATGAGGCTCATCTATGGGATAATAGTTGTAGAAGGGAAGGCCAGTCTAGGAAAGGAAGAC 729 Query 661 AAGTATACTTGGGTGGATATGACAAAGAAGATAAAGCCGCAAGATCATATGATCTAGCTG 720 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 730 AAGTTTACTTGGGTGGATATGACAAAGAAGATAAAGCAGCAAGATCATATGATCTAGCTG 789 Query 721 CACTTAAGTACTGGGGTCCTTCGACTACTACTAATTTCCCCATTACAAACTACGAGAAAG 780 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 790 CACTTAAGTACTGGGGTCCTTCAACTACTACTAATTTCCCCATTACAAACTACGAGAAAG 849 Query 781 AAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGTGGCTGCCATTAGAAGGAAAA 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 850 AAGTAGAGGAAATGAAGCACATGACGAGACAAGAGTTCGTGGCTGCCATTAGAAGGAAAA 909 Query 841 GTAGTGGCTTTTCCAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG 900 ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 910 GTAGTGGATTTTCGAGAGGCGCTTCGATGTATCGAGGAGTTACAAGGCATCACCAACATG 969 Query 901 GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTT 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 970 GAAGATGGCAAGCAAGGATCGGCCGAGTCGCCGGAAACAAAGACCTCTACTTGGGAACTT 1029 Query 961 TTAGCACTGAGGAAGAAGCAGCAGAAGCTTACGATATAGCTGCAATAAAGTTCAGAGGAC 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1030 TTAGCACTGAGGAAGAAGCAGCAGAAGCTTACGATATAGCTGCAATAAAGTTTAGAGGAC 1089 Query 1021 TTAATGCAGTGACCAACTTTGAAATCAATAGGTATGACGTCAAAGCCATCCTAGAGAGCA 1080 ||||||||||||||||||| || ||||| |||| ||||| |||||||| |||||||| | Sbjct 1090 TTAATGCAGTGACCAACTTCGAGATCAACCGGTACGACGTGAAAGCCATTCTAGAGAGTA 1149 Query 1081 GCACTCTTCCCATAGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTGGAGT 1140 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1150 GCACTCTTCCCATCGGAGGAGGCGCAGCTAAACGGCTCAAAGAAGCTCAAGCTCTTGAGT 1209 Query 1141 CTTCAAGGAAACGTGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGG-GGTT 1199 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1210 CTTCAAGGAAACGCGAGGCGGAGATGATAGCCCTTGGTTCAAGTTTCCAGTACGGTGGT- 1268 Query 1200 GGCTCGAGCACAGGCTCTGGCTCCAGCTCATCAAGGCTTCAGCTTCAACCATACCCTCTA 1259 ||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| Sbjct 1269 GGCTCGAGCACAGGCTCTGGCTCCACCTCATCAAGACTTCAGCTTCAACCTTACCCTCTA 1328 Query 1260 AGCATTCAGCAACCTTTAGAGCCTTTTCTATCTCTTCAGAACAATGACATCTCTCATTAC 1319 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1329 AGCATTCAACAACCATTAGAGCCTTTTCTATCTCTTCAGAACAATGACATCTCTCATTAC 1388 Query 1320 AGCAACAACAATGCTCATGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAG 1379 | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1389 AACAACAACAATGCTCACGATTCCTCCTCTTTTAATCACCATAGCTATATCCAGACACAA 1448 Query 1380 CTTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAATCGAGCCAGAACTCGCAG 1439 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 1449 CTTCATCTCCACCAACAGACCAACAATTACTTGCAGCAACAGTCGAGCCAGAACTCTCAG 1508 Query 1440 CAGCTCTACAACGCGTATCTTCATAGCAATCCGGCTCTTCTCCATGGCCTTGTCTCTACC 1499 ||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct 1509 CAGCTCTACAATGCGTATCTTCATAGCAATCCGGCTCTGCTTCATGGACTTGTCTCTACC 1568 Query 1500 TCTATCGTTGACAACAATAATAACAATGGAGGTTCTAGTGGGAGCTACAACACTGCAGCG 1559 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1569 TCTATCGTTGACAACAATAATAACAATGGAGGCTCTAGTGGGAGCTACAACACTGCAGCA 1628 Query 1560 TTTCTTGGGAACCACGGTATTGGTATTGGGTCGAGCTCGACTGTTGGATCTG-CTGAGGA 1618 |||||||||||||||||||||||||||||||| ||||||||||||||||| | | ||||| Sbjct 1629 TTTCTTGGGAACCACGGTATTGGTATTGGGTCCAGCTCGACTGTTGGATC-GACCGAGGA 1687 Query 1619 GTTTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAG 1678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1688 GTTTCCAACCGTTAAAACAGATTACGATATGCCTTCCAGTGATGGAACCGGAGGGTATAG 1747 Query 1679 TGGTTGGACCGGTGAGTCTGTTCAGGGGTCAAATCCTGGTGGTGTTTTCACTATGTGGAA 1738 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1748 TGGTTGGACCAGTGAGTCTGTTCAGGGGTCAAACCCTGGTGGTGTTTTCACTATGTGGAA 1807 Query 1739 TGAGTAA-CATGGATCTC 1755 ||||||| || ||||||| Sbjct 1808 TGAGTAAACAAGGATCTC 1825 > AT1G51190.1 | Symbols: PLT2 | Integrase-type DNA-binding superfamily protein | chr1:18977284-18980618 FORWARD LENGTH=2136 Length=2136 Score = 750 bits (406), Expect = 0.0 Identities = 811/1001 (81%), Gaps = 50/1001 (5%) Strand=Plus/Plus Query 515 GGCCACGCCGAGACGTG-CATTGGACACTTTCGGGCAGCGAACCTCGATCTATCGTGGTG 573 ||| || |||||||| | | ||||| ||||| || || |||||||| ||||||||||| | Sbjct 638 GGCTACACCGAGACG-GACTTTGGAAACTTTTGGACAACGAACCTCTATCTATCGTGGAG 696 Query 574 TCACAAGACATCGATGGACGGGTCGCTATGAGGCTCATCTATGGGATAATAGTTGTAGAA 633 | ||||||||| ||||||| ||| | ||||| |||||||| ||||||||||| ||||||| Sbjct 697 TTACAAGACATAGATGGACCGGTAGATATGAAGCTCATCTTTGGGATAATAGCTGTAGAA 756 Query 634 GGGAAGGCCAGTCTAGGAAAGGAAGACAAGTATACTTGGGTGGATATGACAAAGAAGATA 693 | ||||| || || ||||||||||||||||| ||||| ||||| |||||||||||||| | Sbjct 757 GAGAAGGACAATCAAGGAAAGGAAGACAAGTCTACTTAGGTGGGTATGACAAAGAAGAGA 816 Query 694 AAGCCGCAAGATCATATGATCTAGCTGCACTTAAGTACTGGGGTCCTTCGACTACTACTA 753 |||| || ||| |||||||||||||||||||||| || |||||||| || |||||||| | Sbjct 817 AAGCAGCCAGAGCATATGATCTAGCTGCACTTAAATATTGGGGTCCCTCTACTACTACCA 876 Query 754 A-TTTCCCCATTACAAACTACGAGAAAGAAGTAGAGGAAATGAAGCACATGACGAGACAA 812 | ||| || || || ||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 877 ACTTT-CCGATAACTAACTACGAGAAGGAAGTAGAGGAGATGAAAAACATGACGAGACAA 935 Query 813 GAGTTCGTGGCTGCCATTAGAAGGAAAAGTAGTGGCTTTTC-CAGAGGCGCTTCGATGTA 871 ||||| |||||| | || |||||||||||||| || || || | | || || || ||||| Sbjct 936 GAGTTTGTGGCTTCTATAAGAAGGAAAAGTAGCGGATTCTCGC-GTGGTGCATCCATGTA 994 Query 872 TCGAGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTCGC 931 ||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 995 TCGTGGAGTAACAAGGCATCATCAACATGGAAGATGGCAAGCAAGGATCGGCCGAGTTGC 1054 Query 932 CGGAAACAAAGACCTCTACTTGGGAACTTTTAGCACTGAGGAAGAAGCAGCAGAAGCTTA 991 ||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| Sbjct 1055 TGGAAACAAAGATCTCTACTTGGGAACATTCAGCACGGAGGAAGAAGCAGCAGAAGCTTA 1114 Query 992 CGATATAGCTGCAATAAAGTT-CAGAGGACTTAATGCAGTGACCAACTTTGAAATCAATA 1050 || |||||||| |||||||| | |||| || || || || || |||||||| || ||| Sbjct 1115 TGACATAGCTGCGATAAAGTTTC-GAGGTCTAAACGCGGTTACAAACTTTGAGATAAATC 1173 Query 1051 GGTATGACGTCAAAGCCATCCTAGAGAGCAGCACTCTTCCCATAGGAGGAGGCGCAGCTA 1110 ||||||| || ||||||||||| ||||||| ||| ||||| |||||||| || || |||| Sbjct 1174 GGTATGATGTGAAAGCCATCCTGGAGAGCAACACACTTCCTATAGGAGGTGGTGCGGCTA 1233 Query 1111 AACGGCTCAAAGAAGCTCAAGCTCTGGAGTCTTCAAGGAAACGTGAGGCGGAGATGATAG 1170 ||||||||||||||||||||||||| || || ||||| ||||| |||| | ||||||| Sbjct 1234 AACGGCTCAAAGAAGCTCAAGCTCTAGAATCATCAAGAAAACGAGAGGA--A-ATGATAG 1290 Query 1171 CCCTTGGTTCAAGTTTCCAG---TACGGGGTTG-GCTCGAGCAC-AGGCTCTG--GCT-C 1222 |||| || |||| |||||| || || | | | || || | || ||||| ||| | Sbjct 1291 CCCTCGGATCAAATTTCCATCAATATGGTGCAGCGAGCG-GCTCGAG-CTCTGTTGCTTC 1348 Query 1223 CAGCTCATCAAGGCTTCAGCTTCAACCATACCCTCTAAGCATTCAGCAACCTTTAGAGCC 1282 |||||| | | |||||||||||||||| ||||||||||||||||| |||||||| |||| Sbjct 1349 CAGCTC-T-A-GGCTTCAGCTTCAACCTTACCCTCTAAGCATTCAACAACCTTTTGAGCA 1405 Query 1283 TTTTCTATC-TCTTCAGAACAATGACATCTCTCATTACAGCAACAACAATGCTCATGATT 1341 | ||| ||| || |||| | | || | ||| | |||| |||||||| | | || | Sbjct 1406 TCTTC-ATCATCATCAGC-CTTT-ACTTA-CTC-T-ACAG-AACAACAACGAT-ATC-T- 1455 Query 1342 CCTCC-TCTTTTAATCACCAT-AGCTATATCCAGACACAGCTTCATCTCCACCAACAG-A 1398 | || | | | || || | || || || ||||| ||||||||||| |||||||| | Sbjct 1456 C-TCAGTATCATGATT-CCTTTAGTTACATTCAGACGCAGCTTCATCTTCACCAACAACA 1513 Query 1399 --CCAACAATTACTTGCAGCAACAATCGAGCCAGAACTCGCAGCAGCTCTACAACGCGTA 1456 ||||||||||||||||| | || || || | || || ||||||||||| || || Sbjct 1514 AACCAACAATTACTTGCAGT--CT-TCTAGTCACA-CTT-CA-CAGCTCTACAATGCTTA 1567 Query 1457 TCTTCATAGCAATCC-GGCTCTTCTCCATGGCCTTGTCTCT 1496 |||||| || || || || ||| || ||||| |||||||| Sbjct 1568 TCTTCAGAGTAACCCTGG-TCTGCTTCATGGATTTGTCTCT 1607 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87348948300 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5