BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930035
Length=239
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20865.1 | Symbols: AGP40 | arabinogalactan protein 40 | chr... 283 4e-76
> AT3G20865.1 | Symbols: AGP40 | arabinogalactan protein 40 | chr3:7308504-7308962
REVERSE LENGTH=459
Length=459
Score = 283 bits (153), Expect = 4e-76
Identities = 211/236 (89%), Gaps = 15/236 (6%)
Strand=Plus/Plus
Query 1 aaaaa-aaaaaaCACACAAGAAAGAATGGAGATGAAGAACGTCACCAACATCTTTGTGGC 59
||||| |||||| | |||||||| ||||||||| ||| | ||||||||||||||
Sbjct 51 AAAAACAAAAAAAAAACAAGAAATAATGGAGAT---GAA-G-----AACATCTTTGTGGC 101
Query 60 CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCAGCTACAATGGAGTCTCCAGC 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 102 CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCGGCTACAATGGAGTCTCCAGC 161
Query 120 ACCATCACCAGGTGCTTCCTCTGCC---ACTGTAGCTTTTCCAGTGGTTGGTTCCATCGT 176
||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||
Sbjct 162 ACCATCACCAGGTGCTTCCTCTGCCTCCACCGTAGCTTTTCCGGTGGTTGGCTCCATTGT 221
Query 177 TGCTGCATCACTCTCTGCCTTCTTGGCTCTTCTCTTGCAGTAAAAATTGACAAGAG 232
||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||
Sbjct 222 TGCTGCATCACTCTCCGCCTTCTTGGCTCTTCTCTTGCAGTAGAAA--GACAAGAG 275
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10807566035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5