BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930035

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G20865.1 | Symbols: AGP40 | arabinogalactan protein 40 | chr...   283    4e-76


> AT3G20865.1 | Symbols: AGP40 | arabinogalactan protein 40 | chr3:7308504-7308962 
REVERSE LENGTH=459
Length=459

 Score =  283 bits (153),  Expect = 4e-76
 Identities = 211/236 (89%), Gaps = 15/236 (6%)
 Strand=Plus/Plus

Query  1    aaaaa-aaaaaaCACACAAGAAAGAATGGAGATGAAGAACGTCACCAACATCTTTGTGGC  59
            ||||| |||||| | |||||||| |||||||||   ||| |     ||||||||||||||
Sbjct  51   AAAAACAAAAAAAAAACAAGAAATAATGGAGAT---GAA-G-----AACATCTTTGTGGC  101

Query  60   CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCAGCTACAATGGAGTCTCCAGC  119
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  102  CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCGGCTACAATGGAGTCTCCAGC  161

Query  120  ACCATCACCAGGTGCTTCCTCTGCC---ACTGTAGCTTTTCCAGTGGTTGGTTCCATCGT  176
            |||||||||||||||||||||||||   || ||||||||||| |||||||| ||||| ||
Sbjct  162  ACCATCACCAGGTGCTTCCTCTGCCTCCACCGTAGCTTTTCCGGTGGTTGGCTCCATTGT  221

Query  177  TGCTGCATCACTCTCTGCCTTCTTGGCTCTTCTCTTGCAGTAAAAATTGACAAGAG  232
            ||||||||||||||| |||||||||||||||||||||||||| |||  ||||||||
Sbjct  222  TGCTGCATCACTCTCCGCCTTCTTGGCTCTTCTCTTGCAGTAGAAA--GACAAGAG  275



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10807566035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5