BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930035 Length=239 Score E Sequences producing significant alignments: (Bits) Value AT3G20865.1 | Symbols: AGP40 | arabinogalactan protein 40 | chr... 283 4e-76 > AT3G20865.1 | Symbols: AGP40 | arabinogalactan protein 40 | chr3:7308504-7308962 REVERSE LENGTH=459 Length=459 Score = 283 bits (153), Expect = 4e-76 Identities = 211/236 (89%), Gaps = 15/236 (6%) Strand=Plus/Plus Query 1 aaaaa-aaaaaaCACACAAGAAAGAATGGAGATGAAGAACGTCACCAACATCTTTGTGGC 59 ||||| |||||| | |||||||| ||||||||| ||| | |||||||||||||| Sbjct 51 AAAAACAAAAAAAAAACAAGAAATAATGGAGAT---GAA-G-----AACATCTTTGTGGC 101 Query 60 CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCAGCTACAATGGAGTCTCCAGC 119 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 102 CCTCTTTATCTCGGCCGTGTTAGTGAGCTCAGTCTCCGCGGCTACAATGGAGTCTCCAGC 161 Query 120 ACCATCACCAGGTGCTTCCTCTGCC---ACTGTAGCTTTTCCAGTGGTTGGTTCCATCGT 176 ||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| || Sbjct 162 ACCATCACCAGGTGCTTCCTCTGCCTCCACCGTAGCTTTTCCGGTGGTTGGCTCCATTGT 221 Query 177 TGCTGCATCACTCTCTGCCTTCTTGGCTCTTCTCTTGCAGTAAAAATTGACAAGAG 232 ||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| Sbjct 222 TGCTGCATCACTCTCCGCCTTCTTGGCTCTTCTCTTGCAGTAGAAA--GACAAGAG 275 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10807566035 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5