BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930040
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20910.1 | Symbols: NF-YA9 | nuclear factor Y, subunit A9 | ... 1500 0.0
> AT3G20910.1 | Symbols: NF-YA9 | nuclear factor Y, subunit A9
| chr3:7326382-7328576 FORWARD LENGTH=1232
Length=1232
Score = 1500 bits (812), Expect = 0.0
Identities = 900/941 (96%), Gaps = 11/941 (1%)
Strand=Plus/Plus
Query 18 GATTGAATGGGAATTGAAGACATGCATTCAAAATCTGACA---GTGGGAACAAGATTGAT 74
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 108 GATTGAATGGGAATTGAAGACATGCATTCAAAATCTGACAGTGGTGGGAACAAGGTTGAT 167
Query 75 TCAGAGGTTCATGGTACATTACCGTCGTCTATAAATAGTTTAAACCCTTGGCATCGTGCT 134
|||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 168 TCAGAGGTTCATGGTACAGTATCGTCGTCGATAAATAGTTTAAACCCTTGGCATCGTGCT 227
Query 135 GCTGCTGCTTGCAATGCAAATTCTTGTGTGGAAGCTGGAGATAAATCTTCTAAGTCAATA 194
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 228 GCTGCTGCTTGCAATGCAAATTCTAGTGTGGAAGCTGGAGATAAATCTTCTAAGTCAATA 287
Query 195 GCATTAGCATTGGAATCAAACGGCTCGAAGTCACCATCAAATAGAGATGATAATGTTAAT 254
||||||||||||||||||||||| || || |||||||| ||||||||| ||| ||||||
Sbjct 288 GCATTAGCATTGGAATCAAACGGTTCCAAATCACCATCCAATAGAGATAATACTGTTAAC 347
Query 255 AAAGAATCACAAGTCACAACGTCTCCCCAATCAGCT-G-G---A-AGTGATAAAAATCAA 308
|| ||||||||||||||||||||||| ||||||||| | | | ||||||||||| |||
Sbjct 348 AAGGAATCACAAGTCACAACGTCTCCACAATCAGCTGGAGATTATAGTGATAAAAACCAA 407
Query 309 GAATCTCTGCATCCTGGCATCACACAACCTCCTCCTCACCCTCAACTTGTTGGCC-CGAC 367
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 408 GAATCTCTGCATCATGGCATCACACAACCTCCTCCTCACCCTCAACTTGTTGGCCAC-AC 466
Query 368 AGTTGGATGGGCATCCTCAAATCCATACCAGGATCCATATTATGCAGGAGTGATGGGAGT 427
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 AGTTGGATGGGCATCCTCAAATCCATACCAGGATCCATATTATGCAGGAGTGATGGGAGC 526
Query 428 CTATGGACATCATCCCTTGGGTTTTGTTCCATATGGTGGGATGCCTCATTCAAGAATGCC 487
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 527 CTATGGACATCATCCCCTGGGGTTTGTTCCATATGGTGGGATGCCTCATTCAAGAATGCC 586
Query 488 ACTGCCTCCTGAGATGGCACAAGAACCCGTTTTCGTGAATGCTAAACAGTACCAGGCGAT 547
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 587 ACTGCCGCCTGAGATGGCACAAGAACCAGTTTTCGTGAATGCTAAACAGTACCAGGCGAT 646
Query 548 TCTGAGGCGAAGGCAGGCACGCGCCAAGGCAGAGCTAGAGAAGAAGCTAATAAAATCCAG 607
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCTGAGGCGAAGGCAGGCACGCGCCAAGGCAGAGCTAGAGAAGAAGCTAATAAAATCCAG 706
Query 608 AAAGCCTTATCTCCATGAATCTCGGCATCAACATGCTATGAGGAGGCCAAGGGGTACTGG 667
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 AAAGCCTTATCTACATGAATCTCGGCATCAACATGCTATGAGGAGGCCAAGGGGTACTGG 766
Query 668 AGGACGGTTTGCAAAGAAAACCAACACCGAAGCTTCAAAGCGCAAAGTTGAAGAAAAGAG 727
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 767 AGGACGGTTTGCAAAGAAAACCAACACCGAAGCTTCAAAGCGTAAAGCTGAAGAAAAGAG 826
Query 728 CAATGGTCGTGTTACGCATTCCCCGACATCATCTAATTCTGATCAAGGTGAAGCTTGGAA 787
|||||||| |||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct 827 CAATGGTCATGTTACTCAGTCCCCGTCATCATCTAATTCTGATCAAGGTGAAGCTTGGAA 886
Query 788 TGGTGACTATAGAACACCTCAGGGCGATGAGATGCAGAGCTCAGCTTATAAGAGAAGGGA 847
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 887 TGGTGACTATAGAACACCTCAGGGAGATGAGATGCAGAGCTCAGCTTATAAGAGAAGGGA 946
Query 848 AGAAGGAGAGTGTTCAGGGCAGCAATGGAACAGCCTTTCCTCAAACCATCCTTCTCAAGC 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AGAAGGAGAGTGTTCAGGGCAGCAATGGAACAGCCTTTCCTCAAACCATCCTTCTCAAGC 1006
Query 908 TCGTCTAGCCATTAAATGACCCCACAAGGCGGCAATTCATT 948
||||||||||||||||||||| |||||||||||||||||||
Sbjct 1007 TCGTCTAGCCATTAAATGACCTCACAAGGCGGCAATTCATT 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5