BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930049
Length=212
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20993.1 | Symbols: LCR56 | low-molecular-weight cysteine-ri... 176 7e-44
AT3G20997.1 | Symbols: LCR55 | low-molecular-weight cysteine-ri... 137 3e-32
> AT3G20993.1 | Symbols: LCR56 | low-molecular-weight cysteine-rich
56 | chr3:7360559-7360897 REVERSE LENGTH=234
Length=234
Score = 176 bits (95), Expect = 7e-44
Identities = 116/125 (93%), Gaps = 5/125 (4%)
Strand=Plus/Plus
Query 71 AGATTGCGATGATGCTA-TGTGTGTCACTATGTGTAAGCAAAAATGGAA-GGGAA--GTG 126
||||||||||||||||| | ||||||||| ||||||||||||||||||| || || |||
Sbjct 111 AGATTGCGATGATGCTACT-TGTGTCACTCTGTGTAAGCAAAAATGGAACGGAAATGGTG 169
Query 127 GTGGCTCGTGTTTCCAAAACGTAAATTTAAAGAGTTGCCTTTGCGCTTTTCCATGCCAAG 186
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GTGGCTCGTGCTTCCAAATCGTAAATTTAAAGAGTTGCCTTTGCGCTTTTCCATGCCAAG 229
Query 187 TTTGA 191
|||||
Sbjct 230 TTTGA 234
> AT3G20997.1 | Symbols: LCR55 | low-molecular-weight cysteine-rich
55 | chr3:7362743-7363081 REVERSE LENGTH=231
Length=231
Score = 137 bits (74), Expect = 3e-32
Identities = 105/120 (88%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 71 AGATTGCGATGATGCTATGTGTGTCACTATGTGTAAGCAAAAATGGAAGGGAAGTGGTGG 130
|||||| || || |||| |||||||| ||||||| |||||||||||||||||||||||||
Sbjct 111 AGATTGTGACGAAGCTACGTGTGTCAATATGTGTCAGCAAAAATGGAAGGGAAGTGGTGG 170
Query 131 CTCGTG-TTTCCAAAACGTAAATTTAAAGAGTTGCCTTTGCGCTTTTCCATGCCAAGTTT 189
|||||| |||| ||||| | ||| ||| ||||||| ||||| |||||||||||||||||
Sbjct 171 CTCGTGCTTTC-AAAACTTTAATGTAATGAGTTGCATTTGCAATTTTCCATGCCAAGTTT 229
Score = 80.5 bits (43), Expect = 5e-15
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 21 ATGAATTACCAAGCCACCATTCTTGCTATCTTCATGATTGTCCTTGTTCTAG 72
|||| |||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGACTTACAAAGCCACCATTCTTGCTATCTTCATGATTATCCTTGTTCTAG 52
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9450336812
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5