BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930066 Length=550 Score E Sequences producing significant alignments: (Bits) Value AT3G21130.1 | Symbols: | F-box and associated interaction doma... 178 5e-44 > AT3G21130.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:7408246-7409349 FORWARD LENGTH=1104 Length=1104 Score = 178 bits (96), Expect = 5e-44 Identities = 200/249 (80%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 288 AATAGAATGGTGGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGAAAT 347 |||||| | || |||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 370 AATAGATTAGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGAAGT 429 Query 348 TCCTACGAGAAATCAGAC-TCCTATGCTCTAGGTTACGATAATAGATCCTCCTCTTACAA 406 |||||| || ||||||| || |||||| ||||||| ||||| | |||||| | | |||| Sbjct 430 TCCTACAAGGTATCAGACATC-TATGCTTTAGGTTATGATAACACATCCTCATGTCACAA 488 Query 407 AATCTTGAGGATGGATCGGTTTGCTGGT--GATAT---ATTTCAAACTGAGTACGAAATA 461 |||||||||||||||||| | || || | ||| | |||||||||||||| || | Sbjct 489 AATCTTGAGGATGGATCGATCTGA-GGACCG-TATCCCAATTCAAACTGAGTACCAAGTC 546 Query 462 TTTGACTTCACCTTTAATTTGTGGCG-GTTTGTTGGTGTGACTACCCACTGGTTCATACC 520 | |||||| |||| ||| | ||||| ||| | ||||||| || || ||||||||| Sbjct 547 TATGACTTTACCTCTAAATCGTGGCTAGTT-GATGGTGTGGCTGGAGGCTTGTTCATACC 605 Query 521 ACGGTATTG 529 | | ||||| Sbjct 606 AAG-TATTG 613 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26372927175 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5