BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930066
Length=550
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21130.1 | Symbols: | F-box and associated interaction doma... 178 5e-44
> AT3G21130.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104
Score = 178 bits (96), Expect = 5e-44
Identities = 200/249 (80%), Gaps = 12/249 (5%)
Strand=Plus/Plus
Query 288 AATAGAATGGTGGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGAAAT 347
|||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 370 AATAGATTAGTTGTTTGGAATCCATGTTCAGGTGAAACAAGGTGGATCCAACCTAGAAGT 429
Query 348 TCCTACGAGAAATCAGAC-TCCTATGCTCTAGGTTACGATAATAGATCCTCCTCTTACAA 406
|||||| || ||||||| || |||||| ||||||| ||||| | |||||| | | ||||
Sbjct 430 TCCTACAAGGTATCAGACATC-TATGCTTTAGGTTATGATAACACATCCTCATGTCACAA 488
Query 407 AATCTTGAGGATGGATCGGTTTGCTGGT--GATAT---ATTTCAAACTGAGTACGAAATA 461
|||||||||||||||||| | || || | ||| | |||||||||||||| || |
Sbjct 489 AATCTTGAGGATGGATCGATCTGA-GGACCG-TATCCCAATTCAAACTGAGTACCAAGTC 546
Query 462 TTTGACTTCACCTTTAATTTGTGGCG-GTTTGTTGGTGTGACTACCCACTGGTTCATACC 520
| |||||| |||| ||| | ||||| ||| | ||||||| || || |||||||||
Sbjct 547 TATGACTTTACCTCTAAATCGTGGCTAGTT-GATGGTGTGGCTGGAGGCTTGTTCATACC 605
Query 521 ACGGTATTG 529
| | |||||
Sbjct 606 AAG-TATTG 613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26372927175
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5