BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930067

Length=430
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21130.1 | Symbols:  | F-box and associated interaction doma...  89.8    2e-17
  AT4G04375.1 | Symbols:  | pseudogene, hypothetical protein | ch...  52.8    3e-06


> AT3G21130.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104

 Score = 89.8 bits (48),  Expect = 2e-17
 Identities = 102/125 (82%), Gaps = 15/125 (12%)
 Strand=Plus/Plus

Query  294   TTACACATTGTGGGAGAG--GATA-A-ATGCATACAAGT---TCATCATAGTGGAGAATC  346
             ||||||||||||||||||   ||| | || |||||||||   ||| ||||||| ||| ||
Sbjct  985   TTACACATTGTGGGAGAGCATATATACAT-CATACAAGTGGATCAGCATAGTGCAGATTC  1043

Query  347   TAAATTG-ACATTTCAACTCACTTA-TTATGTTCCAAGTTTGGTTCAAATCCAACAAGGT  404
             |||| ||  ||  | | ||| |||| ||||||||||||||||||||||||||||||| ||
Sbjct  1044  TAAA-TGTCCA--T-ATCTC-CTTACTTATGTTCCAAGTTTGGTTCAAATCCAACAAAGT  1098

Query  405   GTCTA  409
              ||||
Sbjct  1099  ATCTA  1103


> AT4G04375.1 | Symbols:  | pseudogene, hypothetical protein | 
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122

 Score = 52.8 bits (28),  Expect = 3e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  370   ATTATGTTCCAAGTTTGGTTCAAATCCA  397
             ||||||||||||||||||||||||||||
Sbjct  1083  ATTATGTTCCAAGTTTGGTTCAAATCCA  1110



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20408706094


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5