BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930067 Length=430 Score E Sequences producing significant alignments: (Bits) Value AT3G21130.1 | Symbols: | F-box and associated interaction doma... 89.8 2e-17 AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 52.8 3e-06 > AT3G21130.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:7408246-7409349 FORWARD LENGTH=1104 Length=1104 Score = 89.8 bits (48), Expect = 2e-17 Identities = 102/125 (82%), Gaps = 15/125 (12%) Strand=Plus/Plus Query 294 TTACACATTGTGGGAGAG--GATA-A-ATGCATACAAGT---TCATCATAGTGGAGAATC 346 |||||||||||||||||| ||| | || ||||||||| ||| ||||||| ||| || Sbjct 985 TTACACATTGTGGGAGAGCATATATACAT-CATACAAGTGGATCAGCATAGTGCAGATTC 1043 Query 347 TAAATTG-ACATTTCAACTCACTTA-TTATGTTCCAAGTTTGGTTCAAATCCAACAAGGT 404 |||| || || | | ||| |||| ||||||||||||||||||||||||||||||| || Sbjct 1044 TAAA-TGTCCA--T-ATCTC-CTTACTTATGTTCCAAGTTTGGTTCAAATCCAACAAAGT 1098 Query 405 GTCTA 409 |||| Sbjct 1099 ATCTA 1103 > AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | chr4:2136444-2137565 FORWARD LENGTH=1122 Length=1122 Score = 52.8 bits (28), Expect = 3e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 370 ATTATGTTCCAAGTTTGGTTCAAATCCA 397 |||||||||||||||||||||||||||| Sbjct 1083 ATTATGTTCCAAGTTTGGTTCAAATCCA 1110 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20408706094 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5