BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930068

Length=1259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21130.1 | Symbols:  | F-box and associated interaction doma...  71.3    2e-11


> AT3G21130.1 | Symbols:  | F-box and associated interaction domains-containing 
protein | chr3:7408246-7409349 FORWARD LENGTH=1104
Length=1104

 Score = 71.3 bits (38),  Expect = 2e-11
 Identities = 49/54 (91%), Gaps = 2/54 (4%)
 Strand=Plus/Plus

Query  1183  CCATTTCTCTTTAGC-TATGTTCCAAGTTTGGTTCAAATCCAACAAGGTATCTA  1235
             |||| |||| ||| | |||||||||||||||||||||||||||||| |||||||
Sbjct  1051  CCATATCTCCTTA-CTTATGTTCCAAGTTTGGTTCAAATCCAACAAAGTATCTA  1103



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61897271985


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5