BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930082
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51690.3 | Symbols: B ALPHA | protein phosphatase 2A 55 kDa ... 1772 0.0
AT1G17720.1 | Symbols: ATB BETA | Protein phosphatase 2A, regul... 344 1e-93
> AT1G51690.3 | Symbols: B ALPHA | protein phosphatase 2A 55 kDa
regulatory subunit B alpha isoform | chr1:19164075-19170449
FORWARD LENGTH=2336
Length=2336
Score = 1772 bits (959), Expect = 0.0
Identities = 1384/1585 (87%), Gaps = 45/1585 (3%)
Strand=Plus/Plus
Query 1 GACagagacagagagagag-aATGAACGGTGGTGATGAGG-C--CGGAGCTTCGGGAGA- 55
|||||||| |||||||| | |||||||||||||||||||| | || |||||||| |||
Sbjct 302 GACAGAGAGAGAGAGAGGGAAATGAACGGTGGTGATGAGGTCGTCGCAGCTTCGGCAGAC 361
Query 56 CTTTCCTCAGCCTCTT-GATTGGAGATTCTCTCAGGTTTTTGGTGAACGCAGCGCTGGTG 114
| | ||| |||| || || ||||||||||||||||| || |||||||| ||||||||||
Sbjct 362 CCAT-CTCTGCCT-TTGGAATGGAGATTCTCTCAGGTCTTCGGTGAACGAAGCGCTGGTG 419
Query 115 AAGAAGTTCAAGAAGTTGATATAATTTCTGCGATTGAGTTTGATAAATCTGGTGACCATC 174
||||||||||||||||||||||||| || |||||||| |||||||| ||||| ||||||
Sbjct 420 AAGAAGTTCAAGAAGTTGATATAATCTCAGCGATTGAATTTGATAATTCTGGAAACCATC 479
Query 175 TTGCTACTGGGGACCGTGGTGGACGTGTTGTTCTTTTCGAGAGAACAGATTCCAAAAATA 234
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||| ||||
Sbjct 480 TTGCTACTGGGGACCGTGGAGGACGTGTTGTTCTTTTCGAGAGAACCGATACCAATAATA 539
Query 235 CCAGTGGAGCAAGGAGAGATCTTGAAGGAA-CAGACTATCCTCTGAGGCACCCAGAATTT 293
||||||| | || ||||| |||||| ||| | || ||||| |||||||| ||||| |||
Sbjct 540 GCAGTGGAACCAGAAGAGAGCTTGAA-GAAGCTGATTATCCACTGAGGCATCCAGAGTTT 598
Query 294 CGTTATAAAACTGAATTTCAAAGTCATGAACCAGAGTTTGATTACCTCAAGAGTTTGGAG 353
||||||||||| || ||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 599 CGTTATAAAACAGAGTTTCAGAGTCATGACCCTGAGTTTGATTACCTCAAGAGTTTGGAG 658
Query 354 ATAGAGGAGAAAATCAATAAAATTAGATGGTCTCAAACAGCAAATGGTGCTCTTTTTCTC 413
|||||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 659 ATAGAGGAGAAAATTAACAAAATTAGATGGTGTCAAACAGCAAATGGAGCTCTTTTTCTC 718
Query 414 CTTTCGACAAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGATAAAAAGATCAAGAAA 473
|| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 719 CTCTCGACCAATGATAAAACCATCAAGTTTTGGAAGGTTCAAGACAAGAAGATCAAGAAA 778
Query 474 ATCTGTGATATAAATACAGATTCTTCCAA-AACTCTAGGAAATGGAAGTGTTGCAAGCTC 532
||||||||||| ||| ||||| ||| ||| |||| ||||||| |||| |||||||||||
Sbjct 779 ATCTGTGATATGAATTCAGATCCTT-CAAGAACTGTAGGAAACGGAACCGTTGCAAGCTC 837
Query 533 AAGTAACTCAAACAGTACAAACACCTGCCTCACT-AATGGAGGATTACCTGACAAAGTAA 591
|| || ||||||| ||||||| | ||||| | ||||||||| || ||| |||| |
Sbjct 838 GAGCAATTCAAACATTACAAACTCATGCCT-TGTGAATGGAGGAGTATCTG---AAGTGA 893
Query 592 ACAATTCTTTAAGTAATGACTTCTCATTGCC-GCCAGGAGGCATCCCATT-GCTGCGATT 649
|||| || ||| ||||||||||||||||||| | ||||||||||| | || |||||||||
Sbjct 894 ACAACTCCTTATGTAATGACTTCTCATTGCCAG-CAGGAGGCATCTC-TTCGCTGCGATT 951
Query 650 ACCTGTGGTAACTACTAGTCATGAGACTAGCCCTGTGGCTAGATGTCGAAGAGTATACAC 709
||| ||||| | ||||| |||||| | ||||||||||||||||||||||||||||| |
Sbjct 952 ACCAGTGGT-A--ACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGC 1008
Query 710 TCATGCCCATGATTATCATATCAATTCAATCTCAAACAATAGTGATGGCGAGACATTTAT 769
|||||| |||||||||||||| |||||||||||||| || || || ||||| ||||||||
Sbjct 1009 TCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGCGACGGCGAAACATTTAT 1068
Query 770 TTCTGCTGACGATTTGCGAATAAATCTTTGGAACCTGGAAATCAGCAATCAAAGTTTTAA 829
||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||| ||
Sbjct 1069 TTCTGCTGATGATTTGCGAATTAATCTTTGGAATCTGGAAATTAGCAATCAAAGTTTCAA 1128
Query 830 CATTGTTGATGTCAAGCCTGC-AAATATGGAAGATCTAACTGAGGTCATAACATCAGCCG 888
|||||||||||||||||||| ||| |||||||||||| ||||||| || |||||||| |
Sbjct 1129 TATTGTTGATGTCAAGCCTGCGAAA-ATGGAAGATCTATCTGAGGTTATCACATCAGCAG 1187
Query 889 AATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTCGAAAGGCTCAATTCGCC 948
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1188 AATTTCATCCTACCCATTGCAATATGTTAGCCTATAGCAGTTCGAAAGGTTCAATTCGCC 1247
Query 949 TGATTGATCTGCGACAATCAGCTTTATGTGACTCACATTCCAAATTGTTTGAGGACAC-A 1007
||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || |
Sbjct 1248 TGATTGATCTGCGCCAGTCAGCTTTATGTGATTCACATTCAAAATTGTTTGAGGA-ACCA 1306
Query 1008 GAGACAC-CAAGTTCTAGATCATT-TTTCACGGAGATAATTGCTTCAATTTCAGACATCA 1065
||| || || || ||| ||| || ||| || ||||||||||||||| | ||||||||||
Sbjct 1307 GAG-CAAGCAGGTCCTAAATCGTTCTTT-ACTGAGATAATTGCTTCAGTCTCAGACATCA 1364
Query 1066 AATTTGCGAAAGAAGGAAGATATATACTTAGCCGTGACTACATGACACTTAAGTTATGGG 1125
||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 1365 AATTTGCAAAAGAAGGAAGATATCTACTTAGCCGTGACTATATGACACTTAAGTTATGGG 1424
Query 1126 ACATTAACATGGACTCAGGTCCAGTATCAACTTTCCAGGTTCATGAACATTT-AAGACCA 1184
|||| ||||||||| ||||||||||| |||||||||||||||||||| |||| || ||||
Sbjct 1425 ACATCAACATGGACGCAGGTCCAGTAGCAACTTTCCAGGTTCATGAATATTTGAA-ACCA 1483
Query 1185 AAGCTCTGTGATTTATATGAAAATGATTCCATCTTCGATAAGTTCGAGTGTTGTCTAAGT 1244
||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct 1484 AAGCTCTGTGATTTATATGAAAATGATTCCATCTTTGACAAGTTCGAGTGTTGTATAAGT 1543
Query 1245 GGGGACGGATTGCGAGT-GTCTACAGGTTCTTACAGCAATCTCTTCCGTGTGTTTGGTGT 1303
|| | || ||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1544 GGCAATGGCTTGCGAGCAG-CTACAGGTTCTTACAGCAATCTGTTCCGTGTGTTTGGTGT 1602
Query 1304 TTCCCCGGGAAGTACTGAAA-GTACAACCTTGGAAGCAAGCAAAAATCCAATGAGGAGAC 1362
| |||| ||||||||||| | | ||||||| |||||||||| ||| |||||||||||||
Sbjct 1603 TGCCCCCGGAAGTACTGAGACGG-CAACCTTAGAAGCAAGCAGAAACCCAATGAGGAGAC 1661
Query 1363 AAGTCACTACTCCATCGAGGCCATCAAGATCGCTAAGCAGTATAACACGCGTGGTTAGAA 1422
| ||| | | ||| ||||||||||| ||| | |||||||||||||| || || || || |
Sbjct 1662 ATGTCCCAATTCCGTCGAGGCCATCCAGAGCACTAAGCAGTATAACGCGTGTCGTAAGTA 1721
Query 1423 GAGGAGCAGCAGAGAGTCCCGGAGTCGATGGGAATGGTAATTCTTTTGACCATACAACCA 1482
||||| ||| |||| ||| ||||||||||||||| |||| || |||| | ||||| |
Sbjct 1722 GAGGATCAG-AGAG--TCCGGGAGTCGATGGGAATACTAATGCTCTTGATTACACAAC-A 1777
Query 1483 AAT-TGCTGCATCTCGCATGGCATCCAA-CAGAAAACTCGATAGCTTGCGCCGCTGCCAA 1540
|| |||||||||| || |||||||||| | || ||||| || |||||||||||||| ||
Sbjct 1778 AAGCTGCTGCATCTTGCTTGGCATCCAAAC-GAGAACTCAATTGCTTGCGCCGCTGCAAA 1836
Query 1541 CAGTTTGTACATGTACTATGCTTAA 1565
|| |||||||||||||||||||||
Sbjct 1837 TAGCTTGTACATGTACTATGCTTAA 1861
> AT1G17720.1 | Symbols: ATB BETA | Protein phosphatase 2A, regulatory
subunit PR55 | chr1:6093208-6098383 REVERSE LENGTH=2565
Length=2565
Score = 344 bits (186), Expect = 1e-93
Identities = 385/479 (80%), Gaps = 21/479 (4%)
Strand=Plus/Plus
Query 20 AATGAACGGTGGTGATGAGGCCG-GAGCTTCGGGAGACTTTCCTCAGCCTCTT-GATTGG 77
||||||||||||||| || |||| | | | | | | | ||||| | || || || |||
Sbjct 318 AATGAACGGTGGTGACGATGCCGCTA-C-TAGTG-GTC-CTCCTCCGTCT-TTAGAGTGG 372
Query 78 AGATTCTCTCAGGTTTTTGGTGAACGCAGCGCTGGTGAAGAAGTTCAAGAAGTTGATATA 137
|||||||||||||| || ||||| || | ||| || ||||||||||| |||||||| ||
Sbjct 373 AGATTCTCTCAGGTCTTCGGTGAGCGAACCGCCGGAGAAGAAGTTCAGGAAGTTGACATC 432
Query 138 ATTTCTGCGATTGAGTTTGATAAATCTGGTGACCATCTTGCTACTGGGGACCGTGGTGGA 197
||||| || || || ||||||||| ||| |||||||| || ||||| |||||||| ||
Sbjct 433 ATTTCAGCCATCGAATTTGATAAAAGTGGAGACCATCTCGCAACTGGTGACCGTGGGGGC 492
Query 198 CGTGTTGTTCTTTTCGAGAGAACAGATTCCAAAAATACCAGTGGA--G-CAAGG-AGAGA 253
|| || |||||||| || || |||||| | ||| || || |||| | | ||| || ||
Sbjct 493 CGAGTAGTTCTTTTTGAAAGGACAGATACTAAAGAT--CA-TGGAGGGTCCAGGAAG-GA 548
Query 254 TCTTGAAGGA-ACAGACTATCCTCTGAGGCACCCAGAATTTCGTTATAAAACTGAATTTC 312
||||| || | || || || || | ||||| || || ||||| |||||||| |||||||
Sbjct 549 TCTTG-AGCAGACGGATTACCCAGTTAGGCATCCTGAGTTTCGATATAAAACAGAATTTC 607
Query 313 AAAGTCATGAACCAGAGTTTGATTACCTCAAGAGTTTGGAGATAGAGGAGAAAATCAATA 372
| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 608 AGAGTCATGAACCAGAGTTTGACTATCTCAAGAGTTTGGAGATAGAGGAGAAAATCAACA 667
Query 373 AAATTAGATGGTCTCAAACAGCAAATGGTGCTCTT-TTTCTCCTTTCGACAAATGATAAA 431
|||| ||||||| ||| |||| |||||||| || ||||| ||||| ||||| ||||||
Sbjct 668 AAATCAGATGGTGTCAGCCAGCTAATGGTGCA-TTGTTTCTGCTTTCTACAAACGATAAA 726
Query 432 ACCATCAAGTTTTGGAAGGTTCAAGATAAAAAGATCAAGAAAATCT-GTGATATAAATA 489
|||||||| | ||||||||| ||||| || |||||||||||||| | |||| || ||||
Sbjct 727 ACCATCAAATATTGGAAGGTACAAGAGAAGAAGATCAAGAAAAT-TAGTGAAATGAATA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5