BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930083
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21270.1 | Symbols: ADOF2, DOF2 | DOF zinc finger protein 2 ... 931 0.0
> AT3G21270.1 | Symbols: ADOF2, DOF2 | DOF zinc finger protein
2 | chr3:7474679-7475757 FORWARD LENGTH=1079
Length=1079
Score = 931 bits (504), Expect = 0.0
Identities = 613/662 (93%), Gaps = 21/662 (3%)
Strand=Plus/Plus
Query 1 TTTTTGAAGAACGATCGAAGAAAAATGCAGGATCCAGCAGCTTATTACCAGACGATGATG 60
|||||||| || | | ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 232 TTTTTGAATAAAGGTTGAAGAAAAATGCAGGATCCAGCAGCATATTACCAGACGATGATG 291
Query 61 GC---G--A-AACAACAAC--C-A-CA-A-TTTGCAGAGCAAGAACAGCTAAAGTGTCCT 108
|| | | ||||||||| | | || | |||||||||||||||||| |||||||||||
Sbjct 292 GCGAAGCAACAACAACAACAACAACCACAGTTTGCAGAGCAAGAACAGTTAAAGTGTCCT 351
Query 109 CGTTGTGACTCACCCAACACTAAATTCTGTTACTACAACAACTACAATCTCTCACAGCCT 168
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CGTTGTGACTCACCAAACACTAAATTCTGTTACTACAACAACTACAATCTCTCACAGCCT 411
Query 169 CGTCACTTTTGCAAAAGCTGCCGTCGTTACTGGACTAAAGGCGGCGCTCTCCGTAACGTC 228
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 412 CGTCACTTTTGCAAAAGCTGTCGTCGTTACTGGACTAAAGGCGGCGCTCTCCGTAACGTT 471
Query 229 CCCGTCGGTGGTGGTTCTCGCAAGAACGCAACCAAACGTTCCActtcttcttcttcttca 288
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 472 CCCGTCGGTGGTGGTTCTCGTAAGAACGCAACCAAACGATCCACTTCTTCTTCTTCTTC- 530
Query 289 t-ctt-ctCCTCCTTCCAACAGTAGCCAAAACAAGAAGACGAAAAACCCGGATCCGGATC 346
| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TGCTTCCT-CTCCTTCCAACAGTAGCCAAAACAAGAAGACGAAAAACCCGGATCCGGATC 589
Query 347 CTGATCCACGTAATTCACAAAACCCGGATATAGATCCGACCCGGATGCTTTACGGGTTTC 406
|||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 590 CTGATCCACGTAATTCTCAAAAACCGGATTTGGATCCGACCCGGATGCTTTACGGGTTTC 649
Query 407 CGATCGGAGACCAAGACGTTAAAGGTATGGAGATTGGTGGAAGCTTTAGCTCGTTGTTGG 466
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 650 CGATCGGTGACCAAGACGTGAAGGGTATGGAGATTGGTGGAAGCTTTAGCTCGTTGTTGG 709
Query 467 CGTCTAATATGCAGCTTGGTCTTGGAGGAGG-G--ATCATGCTTGATGGGTCGGGTTGGG 523
|| ||||||||||||||||||||||||||| | ||||||||||| |||||||||||||
Sbjct 710 CGAATAATATGCAGCTTGGTCTTGGAGGAGGAGGGATCATGCTTGACGGGTCGGGTTGGG 769
Query 524 ATCATCCGGGTATGGGTTTGGGTTTGAGAAGGACCGAACCGGGTAATAATAATAATAACC 583
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 770 ATCATCCGGGTATGGGTTTGGGTTTGAGGAGAACCGAACCGGGTAATAATAATAATAACC 829
Query 584 CGTGGACTGATCTTGCTATGAACAGAGTGGAGAAAAACTGAAGAA-ACAAATAAGAGAGG 642
| ||||| ||||| ||||||||||||| ||||||||||||||||| | ||| ||||||||
Sbjct 830 CATGGACCGATCTGGCTATGAACAGAGCGGAGAAAAACTGAAGAAGA-AAAGAAGAGAGG 888
Query 643 GG 644
||
Sbjct 889 GG 890
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31094936993
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5