BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930087
Length=1721
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21300.1 | Symbols: | RNA methyltransferase family protein ... 2676 0.0
> AT3G21300.1 | Symbols: | RNA methyltransferase family protein
| chr3:7493439-7496289 REVERSE LENGTH=1912
Length=1912
Score = 2676 bits (1449), Expect = 0.0
Identities = 1645/1738 (95%), Gaps = 20/1738 (1%)
Strand=Plus/Plus
Query 1 CCCGACTCGAGCTCGGTTTCAATGTTGGCCACGACGCCTGTTCATGGACTCAGGTACGTA 60
||||||||| |||| ||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 12 CCCGACTCGGGCTCCGTTTCAATGTTGGCCGCGACGCCTGCTCATGGACTCAGGTACGTG 71
Query 61 GT--T-CCCACACGCTCATGGCTTCATAGGTTTCGTTGCTGctcctcttctctcgcttct 117
|| | ||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 72 GTGGTGCCCACACGCTCATGGCTTCATAGGTTTCGATGCTGCTCGTCTTCTCTCGCTCCT 131
Query 118 ctctctcCTTTTGAATCCTCCGGCGGTAATAAAACCCAGAAGAAGGTGAACGATGAG--- 174
||||| |||| ||||| ||| |||||||||||| ||||||||||| | ||||| |||
Sbjct 132 CTCTCCCCTTCTGAATTCTCGGGCGGTAATAAAGCCCAGAAGAAGCTCAACGACGAGAAC 191
Query 175 AACAGCAACGGAAGCAATGAGAAAACGGCGCCGTATTATCCGAAACGAGG-GCAAACAGT 233
|||| ||||| ||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 192 AACACCAACGTAAGCAATGAGAAAACGGCGCCGTATTATCCGAAACGAGGAG-AAACAGT 250
Query 234 AGAGCTTGTGTGCGAGAGTTTAGGATTCAAAGGCAAAGGAATCTGTAAAGTTGATGGAAC 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GGAGCTTGTGTGCGAGAGTTTAGGATTCAAAGGCAAAGGAATCTGTAAAGTTGATGGAAC 310
Query 294 TGGCTTCGTCGTTATGTGTGACCGAGCTCTTCCCGGTGAACGTTTTCTCGGCCGTATCAC 353
||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| ||||
Sbjct 311 TGGCTACGTCGTTATGTGTGACCGAGCTCTTCCCGGCGAACGTTTTCTTGGCCGTGTCAC 370
Query 354 TCGCCGTAAAGGCAGCTATGCTGAGGTGACAAAAATCAAGACGATATCTCCACATAAGGA 413
|||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 371 TCGCCGCAAAGGCAGCTATGCTGAAGTGACAAAAATGAAGACAATATCTCCACATAAGGA 430
Query 414 CTTAGTAGAAGCTCCATGTGAGTATGCATCTTACTGTGGTGGTTGCAAAACTCAGAATCT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 CTTAGTAGAAGCTCCATGTGAGTATGCATCTTACTGTGGTGGTTGCAAAACTCAGAATCT 490
Query 474 CTCTTATGAAGCTCAGCTTAGAGCTAAAGAAGAGCAAGTTCATGAGCTTATCAGACATGT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CTCTTATGAAGCTCAGCTTAGAGCTAAAGAAGAGCAAGTTCATGAGCTTATCAGACATGT 550
Query 534 TGGAAGGTTTTCTGATAACAATCCTGGCCTTGAGATTGTGTTAAAGCCTATTGTTGCTTG 593
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 551 TGGAAGGTTTTCTGATAACAATCCTGGCCTTGAGATTGTCTTGAAGCCTATTGTTGCTTG 610
Query 594 CGATATCCAATTCAATTATCGGAATAAGATGGAGTTTTCATTTGGTCCACAAAGATGGCT 653
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 611 CGATATTCAATTCCATTATCGGAATAAGATGGAGTTTTCATTTGGTCCACAAAGATGGCT 670
Query 654 TCCGATTGAAATGTTGCACGAGA-AGGAAGATGGTCCTAAGAACTTTGCATTGGGGTTAC 712
||||||||||||||| |||||| | ||||||||||||||||||||||||||||| | |
Sbjct 671 TCCGATTGAAATGTTAAACGAGAGAC-AAGATGGTCCTAAGAACTTTGCATTGGGGCTCC 729
Query 713 ACGCACCTGGATTTTTTGATAAGGTTTTGAATGTCGATAAGTGCTTACTACAGAGCGAGC 772
| |||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||
Sbjct 730 ATGCACCTGGATTTTTTGATAAGGTTTTAAATGTTGATAAGTGCTTATTACAGAGCGAGC 789
Query 773 CAGGAAACTTGGTTCTTGCTGCTGTTCAAGATTGCTGGAGAGATCCTGCATTAAGTCTTT 832
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 790 CAGGAAACTTGGTTCTTGCTGCTGTCCAAGATTGCTGGAGAGATCCTGAATTAAGTCTTT 849
Query 833 CACCATATAATTGTCGTTCACATGTTGGATTTCTTAAACATTTGATGCTGAGAACTGGAA 892
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 850 CACCATATGATTGTCGTTCACATGTTGGGTTTCTTAAACATTTGATGCTGAGAACTGGAA 909
Query 893 GGAATGTGGAGACTGGTTCACAAGAACTTATGGTCAATTTTGTGACATCGTCTTATAAGC 952
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 910 GGAATGTGGAGACTGGTTCACTAGAACTTATGGTCAATTTTGTGACATCGTCTTATAAGC 969
Query 953 CAGAGCTGTTGAAGCCCCTGGTTGATAGGATTTCATCAATTCCTCAAGTGGTAAGCATCA 1012
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 970 CAGAGCTGTTGAAACCCCTGGTTGATAGGATTTCATCAATTCCTCAAGTGGTAAGCATTA 1029
Query 1013 TGAATAATGTAAATTCTTCGGTAGGAAATACATCCGTTGGCGAAAAGGAATACACTCTTT 1072
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1030 TGAATAATGTAAATTCTTCGGTAGGAAACACATCCGTTGGCGAAAAGGAATATACTCTTT 1089
Query 1073 ACGGGAAAGATACAATCACAGAGGTCTTAAGAGGCCTTACATTTCAAATTTCAGCCAACT 1132
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1090 ATGGGAAGGATACAATCACAGAGGTCTTAAGAGGGCTTACATTTCAAATTTCAGCCAACT 1149
Query 1133 CTTTCTTTCAGACTAACACTTATCAGGCTGAAGTTTTATATAAGCTTATTGAGGAATCCG 1192
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1150 CTTTCTTTCAGACTAACACTCATCAGGCTGAAGTTTTATATAAGCTTATTGAGGAATCTG 1209
Query 1193 CTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGACCTTTTCTGTGGAACTGGTACCA 1252
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1210 CTGGACTTAAAGGAGATGGCTCAGAAGTCGTGCTCGATCTTTTCTGTGGAACTGGTACCA 1269
Query 1253 TAGGTCTTACACTTGCCAGAAGGGCGAAACACATATATGGTTATGAAGTAGTACCACAAG 1312
|||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1270 TAGGCCTTACACTTGCCAGAAGGGCGAAACACGTGTATGGTTATGAAGTAGTACCACAAG 1329
Query 1313 CAATAACAGATGCACACAAGAATGCCCAAATAAACGGCATAGAGAATGCAACATTCATCC 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 CAATAACAGATGCACACAAGAATGCCCAAATAAACGGCATAGAGAATGCAACATTCATCC 1389
Query 1373 AAGGGGATCTAAACAAAATAGGAGAAGATTTTGGGAACAATTTCCCTAAGCCTGATATTG 1432
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1390 AAGGGGATCTAAACAAAATAGGAGAAGATTTTGGGAACAATTTCCCTAAGCCTGATATCG 1449
Query 1433 TTATTTCTGATCCTAATCGACCTGGTATGCACATGAAGTTGATTAAGTTTCTGCTAAAGC 1492
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1450 TTATTTCTGATCCCAATCGACCTGGTATGCACATGAAGTTGATCAAGTTTCTGCTAAAGC 1509
Query 1493 TTAAATCTCCACGAATCATTTACGTTTCCTGTAATCCTGCAACCTGCGCTAGGGATCTTG 1552
||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 1510 TTAAATCTCCACGGATCATTTATGTTTCCTGTAATCCTGCAACCTGCGCCAGGGATCTCG 1569
Query 1553 ACTACCTTTGTCATGGCGTGGAGGAGAAGAATCTCAAAGGTTGCTACAAGCTGATGAGTG 1612
| ||||| ||||| |||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1570 ATTACCTCTGTCACGGCGTGGAGGAGAAGAATCTAAAAGGTTGCTACAAACTGATGAGTG 1629
Query 1613 TTCAGCCAGTGGATATGTTCCCTCACACTCCTCACATTGAATGTGTCTGCTTGCTAGAGC 1672
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1630 TTCAGCCAGTGGATATGTTCCCTCACACTCCTCACATCGAATGTGTCTGCTTGTTAGAGC 1689
Query 1673 TTGCTTG---T-----G--ACCATGGCTGCTTCATTTGATCTCTAATCAGATGAGAGA 1720
||||||| | | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1690 TTGCTTGAGCTCTATTGTCACCATGGCTGCTTCATTTGGTCTCTAATCAGATGAGAGA 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85089923775
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5