BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930098
Length=612
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 905 0.0
> AT3G21400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: N-terminal protein myristoylation;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING:
13 growth stages; Has 29 Blast hits to 29 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr3:7534633-7536509 REVERSE LENGTH=974
Length=974
Score = 905 bits (490), Expect = 0.0
Identities = 572/611 (94%), Gaps = 8/611 (1%)
Strand=Plus/Plus
Query 5 gtgtgtgtTTCTGCGGTAATGGGTCAGCAATTTCGTCGAGCTGTTGGGAAAATCAAAGAA 64
|||||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 199 GTGTGTGTTTTTGCGGTGATGGGTCAGCAATTGCGTCGAGCTGTTGGGAAAATCAAAGAA 258
Query 65 GTTGAGAGATCATCACCATCAAGGGTCGTCG-TTGATCGGAGATCGCTTCCAACGGAGGA 123
||||||||||||||||||||||| ||| || ||||||||||||||||||| ||||||||
Sbjct 259 GTTGAGAGATCATCACCATCAAGAGTC-TCCATTGATCGGAGATCGCTTCCTACGGAGGA 317
Query 124 GCTCAGCGCCGTGAAATCATCATCTCCGTCTACTGCCGCCGTTGATGTTGTTTCTGAGAA 183
|||||| ||||||||||| || || | |||||||||||||||||||| |||||||| ||
Sbjct 318 GCTCAGTGCCGTGAAATCGTC-TC-C-GTCTACTGCCGCCGTTGATGGAGTTTCTGATAA 374
Query 184 AGGTCGAAGAACCAGTGAGGATAATGTTTTAGAGGAAAGAGATCCGAAATATGATACAAT 243
||||||||||||||||||||||||||||||||||||| |||| || || |||||||||||
Sbjct 375 AGGTCGAAGAACCAGTGAGGATAATGTTTTAGAGGAACGAGACCCCAAGTATGATACAAT 434
Query 244 GTTGAACCAAATGGTTGGGAGAATTAGAGCTAAACCTGGAGGCAAAGCTGAGATGGGAGA 303
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 435 GTTGAACCAAATGGTTGGGAGAATAAAAGCTAAACCTGGAGGCAAAGCTGAGATGGGAGA 494
Query 304 GGCATCAGTAGTTGAAACATCAAAAAGGCCACTCCCAAAGCTCCGGAACACAACTCCTGA 363
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 495 GGCATCAGTAGTTGAGACATCGAAAAGGCCACTCCCAAAGCTCCGGAACACAACTCCTGA 554
Query 364 ATCAACAAGATATGAGGAAAACCCGGTGCCTCAAGGAACATTGAACGTAGCACAAGTGCG 423
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 555 ATCAACAAGATATGAGGAAAACCCGGTGCCTCAAGGAACGTTGAACGTAGCACAAGTGCG 614
Query 424 ACACATCATGCTTCTCTTTCAGGGAAAAGCTCAGGATCACCATGGTCCAATGAGTGTTAA 483
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 615 ACACATCATGCTTCTCTTTCAGGGAAAATCTCAGGATCACCATGGTCCAATGGGTGTTAA 674
Query 484 CCAGATAGCTGAAAAGTACCGGATCGATGTCTCTCAGGTACAGAAGATCACCCAGTTCCT 543
| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 675 CGAGATAGCTGAAAAATACCGGATTGATGTCTCTCAGGTTCAGAAGATCACTCAGTTCCT 734
Query 544 CTCTTTGCCTACA-GAGGTTACTGATAAGCAGAAGAAACAATATGAATAAAAA-GTAAAG 601
||||| ||| || ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 735 GTCTTTACCT-CAAGAGATTACTGATAAGCAGAAGAAACAATATGAATAAAAAAGTAAAG 793
Query 602 GCTATGTTCGT 612
||| |||||||
Sbjct 794 GCTCTGTTCGT 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29487444289
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5