BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930107
Length=2412
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21480.1 | Symbols: | BRCT domain-containing DNA repair pro... 2514 0.0
> AT3G21480.1 | Symbols: | BRCT domain-containing DNA repair protein
| chr3:7567730-7572161 FORWARD LENGTH=3297
Length=3297
Score = 2514 bits (1361), Expect = 0.0
Identities = 1561/1655 (94%), Gaps = 23/1655 (1%)
Strand=Plus/Plus
Query 22 ATGGCTAAAGCAAATCAAAACTTTTCTGCGTATCAAGAGACCCAACCGATTGATTCTAAT 81
||||||||| | || |||||||||||| ||||| |||||||||| |||||||||||||||
Sbjct 1 ATGGCTAAATCTAACCAAAACTTTTCTCCGTATGAAGAGACCCAGCCGATTGATTCTAAT 60
Query 82 CC-CTCTTCTCCTTCTGATTCTGGTGAAGATAAAGATAGCTTGCTTGGGGACTGTGACAC 140
|| | ||||| ||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 61 CCAC-CTTCTTCTTCTGATTCTGGCGAGGATAAAGATAGCTTGCTTGGGGATTGTGACAC 119
Query 141 ACAACCTTTTGAAGACGATGCTTGGATTAATGATCAATATATGGAGACTCAGGTCATTGA 200
||||||| |||| ||| |||||| |||||||||||| |||||||||||||||||||| ||
Sbjct 120 ACAACCTGTTGATGACAATGCTTTGATTAATGATCAGTATATGGAGACTCAGGTCATGGA 179
Query 201 TATTGAATGTGATAATGAAGAATTTCTTCTTTGTAATGAAACTCAAGCGGTTGATTTGGG 260
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 180 TACTGAATGTGATAATGAAGAATTTCTTCTTTGTAATGAAACTCAAGCAGTTGATTTGGG 239
Query 261 ATTTGAAAACGGAGAAGAGGTATTTGTAGAGGGGACACAGTTACTTGAAGCTTCTGATGG 320
|||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||
Sbjct 240 ATTTGAAACCGGAGAAGAAGTACTTGTAGAGGGGAAACAGTTACTTGAAGCTTCTGATGG 299
Query 321 TTTGGCTACTCAGGTTTTGGATCTTTGTGCTGAGGAAGTTGTTGTGGATAGTGAGGATGA 380
||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 300 TTTGGCTACTCAGGTTTTGGATCTTTGTGATGATGAAGTTGTTGTGGATAGTGATGATGA 359
Query 381 TGTTACTGATGTCTTGGAGGACAACAGTGAGT-TCTCTGATAGTGATGACTCGTGTAGTA 439
|||||||||||| ||||||| ||||||||| | |||||||||||||||||||| ||||||
Sbjct 360 TGTTACTGATGTGTTGGAGGGCAACAGTGA-TCTCTCTGATAGTGATGACTCGGGTAGTA 418
Query 440 AAGCGGAAACTGTGTTATCTAGTGAAGAGAATAGACAGGATGCTAATGAAAAGGTTAAAT 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGCGGAAACTGTGTTATCTAGTGAAGAGAATAGACAGGATGCTAATGAAAAGGTTAAAT 478
Query 500 CAACAGTTGCCCTTGATGCTAATTGGTCGAACGAACATGGAGTTTCTGGAAAAAAGGTGG 559
|| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 479 CAGCAGTTGTCTTTGATGC---TTGGTCGAACGAACATGGAGTTTCTGGAAAAAAGGTGG 535
Query 560 CTAGGTTCGCTTCAGTTCGTTCATCAGCTTTTCGTGCTTCTGCTGTGGCAGCTCGTGCGG 619
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 536 CTAGGTTCGCTTCAGTTCGTTCAGCAGCTTTTCGTGCTTCTGCTGTGGCAGCTCGTGTTG 595
Query 620 CAAA-C------C--CCAACACTGACTGTTCTACTCTAATCAACTGTCATTCTTCTGGGA 670
|||| | | ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 596 CAAACCAAAAATCTGCCAACACTGACTGTTCTACACTAATCAACTGTCATTCTTCTGGGA 655
Query 671 AAGGAGCCACACATAATTCTAGTCTAGAAAATAGTGTTGGAGAAGTAGGGAATCAGCAAT 730
||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 656 AAGGAACCACACATAATTCTGGTCTAGAAAATAGTGTTGGGGAAGTAGGGAATCAGCAAT 715
Query 731 CTCTTACCAGTATATTTGTTGAAGAGAAAAATGACTTAAGAACAGCAAACAAAACAGCGA 790
||||||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||
Sbjct 716 CTCTTACCAGTTTATTTGTTGAAGAGAAAAAGGACTTAAGAACAGGAAAAAAAACAGCGA 775
Query 791 GGAAGCTTTTCATTGAGGATTTGCCTGAAG-AAAATTGTCATTCTACTGATGGCAATGTC 849
||||||||||| | |||||||| ||||||| |||||| ||||||||||||| ||||||||
Sbjct 776 GGAAGCTTTTCGTAGAGGATTTCCCTGAAGAAAAATT-TCATTCTACTGATTGCAATGTC 834
Query 850 GATCTGGGGAATTTGAGTTATATTGACTCTCAAGAACCTGGCGAGGCATCCCAGGCCAGT 909
||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||
Sbjct 835 GATCTGGGGAATTTGAGTTATATTGGCTCTCAAGAACCTGGTGAGGAATCCCAGGCCAGT 894
Query 910 GCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGATTTTGAAGTT 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GCTCTTAACTTGGTTGATAAGCTCATTAGTGAGTGCCGTCTAGAGTTTGATTTTGAAGTT 954
Query 970 GAAGCTGACTATGGAAGGAAAACAGAAGAAAAATCAAAATTTGTTCAGATTTTTAAAGGT 1029
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 955 CAAGCTGACTATGGAAGGAAAACAGAAGATAAATCAAAATTTGTTCAGATTTTTAAAGGT 1014
Query 1030 CCACAAGAATTAGCAAAGAAAGTAAGTTACAAAAGCGGAGCTGTTGGAAACGATATTTTC 1089
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 1015 CCACAAGAATTAGCAAAGAAGGTAAGTTACAAAAGTGGAGCTGTTGGAAACAATATTTTC 1074
Query 1090 GACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAGAAGAAAAGAT 1149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GACTGGGATGATAATCGTGAGGATGAAGGAGGGGGTGATATCTATCGTAGAAGAAAAGAT 1134
Query 1150 GAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAGAGAACAGAAA 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 GAATTCTTTGGCGTTGCAAGTAAAAGACGGGAATTTTCTAGCTTGCCTAGAGAACAGAAA 1194
Query 1210 AGAGAACTGATACCAGTTGCTGTGGATAAAAGAAGGGCT--T-CTGATTCCAAACTGTTG 1266
|||||||||||||||||||| |||||||||||| ||||| | |||||||||||||||||
Sbjct 1195 AGAGAACTGATACCAGTTGCAGTGGATAAAAGATGGGCTCGTTCTGATTCCAAACTGTTG 1254
Query 1267 CAGCATAGTGTGACTAGGAGCCGAAAAAATATCCAGGGTGCTAAAAAGAATCTTGGCAAA 1326
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1255 AAGCATAGTGTGACTAGGAGCCGAAAGAATATCCAGGGTGCTAAAAAGAATCTTGGCAAA 1314
Query 1327 GAGTTAGATGAAGTTCGTGAAGCGGTAGTTTTAGGGAATTATACACAAGTGGCTGCTGAA 1386
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1315 GAGTTAGATGAAGTTCGTGAAGCGGCAGTTTTAGGGAATGATACACAAGTGGCTGCTGAA 1374
Query 1387 GCGATTGATGATCTGTCCTCTGGAG-CCTGTGGCAAGTTTGATGCTGAGGCGAGTTGTCT 1445
|||||||||||||||| |||||||| || ||||||| ||||||| |||||||||||||||
Sbjct 1375 GCGATTGATGATCTGTGCTCTGGAGACC-GTGGCAAATTTGATGGTGAGGCGAGTTGTCT 1433
Query 1446 TACAGGAAAGAAACTGTCACCAGGAGAAGAGAGAGGATTTTCTCCCGGTGGAGTCGTTAC 1505
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1434 TACAGGAAAGAAACTGTCACCAGAAGAAGAGAGAGGATTTTCTCCCGGTGGAGTCGTTAC 1493
Query 1506 TAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAATTGTTGaaaaa 1565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 TAGACAATCCAAGGGAACTAAGAGGATTCAGGCTATGAGTAAAGATGAATTGTTGAAAAA 1553
Query 1566 aaGAATGAAGAAGGCTAGTCCAAGTCCTGCTAAAGCTTGCCGGAGGAATATTGAAGGGTC 1625
||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||| ||
Sbjct 1554 AAGAATGAAGAAGGCTAGTCCTAGTCCTGCTAAAGCTTGCCGGACGAATATCGAAGGATC 1613
Query 1626 TTTAAAGGGTGACCAGCTTGATAAAGAAGGTCCAT 1660
|| ||| |||||||||||| |||||||||||||||
Sbjct 1614 TTCAAATGGTGACCAGCTTAATAAAGAAGGTCCAT 1648
Score = 1251 bits (677), Expect = 0.0
Identities = 727/752 (97%), Gaps = 0/752 (0%)
Strand=Plus/Plus
Query 1661 CGGAACCTATCTCCAAGACAAAGAGTACTAGAAAGAGAAGAGATTTGGGTAGTATACGTG 1720
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2396 CGGAACCTATCTCCGAGACAAAGAGTACTAGAAAGAGAAGAGATTTGGGTAGTATATGTG 2455
Query 1721 TCCTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAAGAAGATTTTGGCAA 1780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2456 TCTTGTTCAGCCAGCATCTTGATGAAGATGTGACCAAGCATCAGAAGAAGATTTTGGCAA 2515
Query 1781 GGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTTCTTAGCTGATAACT 1840
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2516 GGTTTGATATCTCGGAAGCTTCCTCCATGAAGGAGGCAACACACTTCATAGCTGATAACT 2575
Query 1841 TTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCCAGTGGTCACAACAC 1900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 TTACGCGCACAAGGAACATGCTAGAGGCAATCGCTTCAGGCAAGCCAGTGGTCACAACAC 2635
Query 1901 AATGGCTTGAAAGCATCGATCAAGTAAGCATATACGTTGACGAGGATATGTATATACTCA 1960
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 2636 AATGGCTTGAAAGCATCGATCAAGTAAACATATACGTTGATGAGGATATGTATATACTCA 2695
Query 1961 GAGATTCAAAAAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTCTTTGGCTCGTGCAC 2020
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2696 GAGATTCAAAGAAGGAGAAGGAGTTCTGTTTCAACATGGGGGTTTCTTTGGCTCGTGCAC 2755
Query 2021 GCCAGTTTCCGCTACTACAGGGGAGAAGAGTTTTTATCACCCCAAATACAAAGCCTGGTT 2080
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct 2756 GCCAGTTTCCGCTACTACAGGGAAGAAGAGTTTTTATCACTCCAAATACAAAGCCTGCTT 2815
Query 2081 TAAACACAATCACGACTTTGGTTAAGGCTGTTCATGGACTGCCTGTAGAAAGACTCGGAA 2140
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 2816 TAAACACAATCACTACTTTGGTTAAAGCAGTTCATGGACTGCCTGTAGAAAGACTCGGAA 2875
Query 2141 GATCTGCCCTAAGTGAAGATAAGGTCCCAGAGAATCTTCTGGTCTTATCATGTGAAGAGG 2200
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2876 GATCTTCCCTAAGCGAAGATAAGGTCCCAGAGAATCTTCTGGTCTTATCATGTGAAGAGG 2935
Query 2201 ATCGCGCTACCTGCATACCGTTTCTAGAAAGAGGGGCCGAGGTATATAGCTCGGAGTTAC 2260
||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 2936 ATCGCGCTATCTGTATACCCTTTCTGGAAAGAGGGGCCGAGGTATATAGCTCGGAGTTAC 2995
Query 2261 TACTGAATGGGATAGTTACTCAAAGGCTTGAGTATGAGAGGTACCGTCTCTTCACAGACC 2320
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2996 TACTAAATGGGATAGTTACCCAAAGGCTTGAGTATGAGAGGTACCGTCTCTTCACAGACC 3055
Query 2321 ATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGCAAAGGTAAGTTTCAACGCC 2380
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 3056 ATGTGAGAAGAACGCGGTCAACGATATGGATCAAAGACGGGAAAGGTAAGTTCCAACGTC 3115
Query 2381 GTAGCGGGTAAAAGAGGAAATGTGATCAAACT 2412
|||||||||||||||| |||||||||||||||
Sbjct 3116 GTAGCGGGTAAAAGAGTAAATGTGATCAAACT 3147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119778500370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5