BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930108 Length=757 Score E Sequences producing significant alignments: (Bits) Value AT3G21481.1 | Symbols: | Pseudogene of AT4G34870; ROC5 (ROTAMA... 326 2e-88 > AT3G21481.1 | Symbols: | Pseudogene of AT4G34870; ROC5 (ROTAMASE CYP 5); peptidyl-prolyl cis-trans isomerase | chr3:7572232-7572483 REVERSE LENGTH=252 Length=252 Score = 326 bits (176), Expect = 2e-88 Identities = 228/252 (90%), Gaps = 8/252 (3%) Strand=Plus/Plus Query 216 GCTAATCCTAAAG-tttttttttATTTG-GCCGTGGACGGCAGACTGGCTGGTCGGATCG 273 ||||||||||||| |||||||||||||| | ||||||| ||||| | | ||||||||| | Sbjct 1 GCTAATCCTAAAGTTTTTTTTTTATTTGAG-CGTGGACAGCAGAGT-G-TGGTCGGATTG 57 Query 274 TGATTGAGCTCTTTGCAGATACGACCCCGCGAACGGCAGAGAACTTCCGGGCCCTATGTA 333 |||| |||||||||||||| ||||| || ||| |||| ||||| |||||||||||||||| Sbjct 58 TGATGGAGCTCTTTGCAGACACGACACCACGAGCGGCGGAGAATTTCCGGGCCCTATGTA 117 Query 334 C-CGGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 392 | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 118 CACAGGGAGAAAGGGATGGGGAAGCTTGGTAAGCCACTCCACTACAAGGGATCAATCTTC 177 Query 393 CACCGTCTTGTCCCCTA-TCAAATGTTCTGTGGAGGAGATATCACTGCTGGTAATGGAAG 451 |||||||||| || || |||||||||||||||||||||| ||||||||||| ||||||| Sbjct 178 CACCGTCTTGAACC-TAATCAAATGTTCTGTGGAGGAGATTTCACTGCTGGTGATGGAAG 236 Query 452 TGGAGGCGAATG 463 ||||||||||| Sbjct 237 CGGAGGCGAATG 248 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36771395604 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5