BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930112
Length=505
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21510.1 | Symbols: AHP1 | histidine-containing phosphotrans... 832 0.0
> AT3G21510.1 | Symbols: AHP1 | histidine-containing phosphotransmitter
1 | chr3:7578175-7579599 REVERSE LENGTH=784
Length=784
Score = 832 bits (450), Expect = 0.0
Identities = 478/492 (97%), Gaps = 0/492 (0%)
Strand=Plus/Plus
Query 14 AGAGAAGATGGATTTGGTTCAGATGCAGAAGAGTTTGCAAGATTACACCAAATCACTCTT 73
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 56 AGAGAATATGGATTTGGTTCAGAAGCAGAAGAGTTTGCAAGATTACACCAAATCACTCTT 115
Query 74 CTTGGAAGGGATTTTGGACAGCCAGTTCTTGCAGCTGCAGCAACTACAAGATGAAAGCAA 133
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 116 CTTAGAAGGGATTTTGGACAGCCAGTTCTTGCAGCTGCAACAACTACAAGATGAAAGCAA 175
Query 134 TCCTGATTTTGTTTCACAAGTTGTCACACTCTTCTTCCAAGACTCTGATAGGATTCTCAA 193
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TCCAGATTTTGTTTCACAAGTTGTCACACTCTTCTTCCAAGACTCTGATAGGATTCTCAA 235
Query 194 TGATCTCTCACTTTCCCTAGATCAACAAGTTGTAGACTTCAAAAAAGTTGATCCCCATGT 253
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 236 TGATCTCTCACTTTCCCTAGATCAACAAGTTGTAGACTTTAAAAAAGTTGATCCCCATGT 295
Query 254 TCATCAACTCAAAGGTAGCAGCTCCAGTATAGGAGCACAGAGAGTTAAGAATGCTTGTGT 313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCATCAACTCAAAGGTAGCAGCTCCAGTATAGGAGCACAGAGAGTTAAGAATGCTTGTGT 355
Query 314 TGTCTTCCGCAGCTTCTGCGAGCAACAAAATGTCGAAGCATGTCATAGATGTTTGCAACA 373
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 356 TGTCTTCCGCAGCTTCTGCGAGCAGCAAAATGTCGAAGCATGTCATAGATGTTTGCAACA 415
Query 374 AGTGAAGCAAGAGTACTATCTTGTGAAGAACAGATTAGAGACTCTGTTCAAGCTGGAGCA 433
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 416 AGTGAAGCAAGAGTATTATCTTGTGAAAAACAGATTAGAGACTCTGTTCAAGCTGGAGCA 475
Query 434 GCAGATTGTAGCTTCTGGTGGAATGATCCCGGCAGTAGAACTCGGATTTTGAGTGAACTT 493
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||
Sbjct 476 ACAGATTGTAGCTTCTGGTGGAATGATCCCGGCCGTCGAACTCGGATTTTGAGTGAATTT 535
Query 494 CATAAAAATCTC 505
|||||| |||||
Sbjct 536 CATAAACATCTC 547
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24112390560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5