BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930113
Length=661
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21520.1 | Symbols: DMP1, AtDMP1 | DUF679 domain membrane pr... 996 0.0
> AT3G21520.1 | Symbols: DMP1, AtDMP1 | DUF679 domain membrane
protein 1 | chr3:7581959-7582793 FORWARD LENGTH=835
Length=835
Score = 996 bits (539), Expect = 0.0
Identities = 628/669 (94%), Gaps = 14/669 (2%)
Strand=Plus/Plus
Query 2 TAACTCT-AGGTTCAAGCTCATGTCCGAAACTTCTTCTTTGCT-ATTACCCAAAACAAAC 59
||||||| |||||||||||||||||||||| |||||||||| | ||||||||||||||
Sbjct 22 TAACTCTAAGGTTCAAGCTCATGTCCGAAA---CTTCTTTGCTCA-TACCCAAAACAAAC 77
Query 60 TCTCCAGCTTCATCAGAAACCATGG------CAAACAAATCCCTCACAGGCCTAGAGAGT 113
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 78 TCTCCAGCTTCATCAGAAAACATGGCAAACACAAACAAATCCCTCACAGGCCTAGAGAGT 137
Query 114 CTTATAAAGCTTCTCCCAACGGGAACACTCTTTATCTACCTTTTACTTAACCCTGTCCTC 173
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 138 CTTATAAAGCTTCTCCCAACGGGAACACTCTTTATCTACCTTCTACTTAACCCTGTCCTC 197
Query 174 ACTAACGACGGTGAATGCTCCACGGGTAATAAGGTCATGTCGAGCATTCTTGTCGCGCTT 233
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 198 ACTAACGACGGTGAATGCTCCACAGGTAATAAGGTCATGTCGAGCATTCTTGTCGCCCTT 257
Query 234 TGCAGCTTCTCCTGCGTGTTTTCATGCTTTACTGATAGTTTCAAAGGCGTCGACGGATCA 293
|||||||| |||||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 258 TGCAGCTTTTCCTGCGTCTTCTCATGCTTTACCGATAGTTTCAAAGGCGTTGACGGATCA 317
Query 294 AGAAAGTTCGGTATAGTCACCAAGAAGGGTCTTTGGACTTACGCGGAGCCAGGATCCGTG 353
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 318 AGAAAGTTCGGTATAGTCACCAAGAAAGGTCTTTGGACTTACGCGGAGCCAGGATCCGTG 377
Query 354 GATTTGTCCAAGTACAAGCTCAGGATCA-CGGATTTCGTTCATGCGGGTTTCGTGCTAGC 412
||||| |||||||||||||| ||||| | |||||||||||||||||||||||||||| ||
Sbjct 378 GATTTATCCAAGTACAAGCTTAGGAT-AGCGGATTTCGTTCATGCGGGTTTCGTGCTGGC 436
Query 413 TGTGTTTGGTGCACTGGTGTTGCTTGACGCTAATACCGCGAGCTGCTTTTATCCTCGGTT 472
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TGTGTTTGGTACACTGGTGCTGCTTGACGCTAATACCGCGAGCTGCTTTTATCCTCGGTT 496
Query 473 CAGGGAAACGCAAAAGACACTTGTCATGGCTTTGCCTCCAGCCGTGGGTGTTGCCTCAGC 532
||||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 497 CAGGGAAACACAGAAGACACTTGTCATGGCTTTGCCTCCTGCCGTGGGTGTTGCCTCAGC 556
Query 533 TGCTATCTTTGCTTTGTTTCCGAGCAAACGGAGTGGAATCGGGTACGCACCAATCGCTGA 592
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||
Sbjct 557 CACTATCTTTGCTTTGTTTCCGAGCAAACGAAGTGGAATCGGGTACGCGCCAATTGCTGA 616
Query 593 GGAGGTAGCTGCTGAAGAGGAGACCAAGAAAGGCTCTGTCTCTGCCTAAGATTGGTTACC 652
|||||||| ||||||||||||||||||||||| ||| ||||||||||||||| |||||||
Sbjct 617 GGAGGTAGGTGCTGAAGAGGAGACCAAGAAAGCCTCGGTCTCTGCCTAAGATCGGTTACC 676
Query 653 TCAGTTGTT 661
|||||||||
Sbjct 677 TCAGTTGTT 685
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31948917492
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5