BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930116
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21550.1 | Symbols: DMP2, AtDMP2 | DUF679 domain membrane pr... 911 0.0
> AT3G21550.1 | Symbols: DMP2, AtDMP2 | DUF679 domain membrane
protein 2 | chr3:7591483-7592322 REVERSE LENGTH=840
Length=840
Score = 911 bits (493), Expect = 0.0
Identities = 562/595 (94%), Gaps = 6/595 (1%)
Strand=Plus/Plus
Query 5 AAGAACAACAACGAAAATGTCGAAAACATTCAAAGCCATAAGAGACCGGACATATTCAGG 64
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 AAGAAGAACAA-AAAAATGTCGAAAACATTCAAAGCCATAAGAGACCGGACATATTCAGG 104
Query 65 CGTAGGAGACCTCATCAAGCTCCTCCCGACCGGAACCGTCTTCTTGTTCCAATTCTTAAA 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 105 CGTAGGAGACCTCATCAAGCTCCTCCCGACCGGAACCGTCTTCTTGTTCCAATTTTTAAA 164
Query 125 CCCTGTCCTAACCAACAACGGACATTGCCTCCTCATCAACAAATACTTAACCGGAGCTCT 184
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 165 CCCTGTCCTAACCAACAATGGACATTGCCTCCTCATCAACAAATACTTAACCGGAGTTCT 224
Query 185 CATCGTTGTTTGTGCCTTCTCTTGTTGCTTTACTTGCTTCACCGATAGTTACCGAACAAG 244
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 225 CATCGTTATTTGTGCCTTCTCTTGTTGCTTCACTTGCTTCACCGATAGTTACCGAACAAG 284
Query 245 AGACGGTTACGTTCATTATGGAGTTGCTACCGTGAAGGGTCTCTGGCCAGATTCGTCTTC 304
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 285 AGACGGTTACGTTCATTATGGAGTTGCCACCGTGAAGGGTCTTTGGCCAGATTCATCTTC 344
Query 305 AGTGGATTTGTCTTCGAAACGGCTTAGAGTTGGAGATTTCGTTCACTCTTTCTTCTCTCT 364
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 345 AGTGGATTTGTCTTCGAAAAGGCTTAGAGTTGGAGATTTCGTTCACGCTTTCTTCTCTCT 404
Query 365 TATCGTGTTCAGTGTTATATCCTTGTTGGATGCAAACACTGTGAATTGTTTCTATCCTGG 424
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 405 TATCGTGTTCAGTGTTATTTCCTTGTTGGATGCAAACACCGTGAATTGTTTCTATCCTGG 464
Query 425 ATTTGGTTCTACCGGGAAGATCTTTCTTATGGTTTTGCCTCCGGTGATTGGAGTTATCTC 484
||||| || | |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 465 CTTTGGCTCCGCTGGGAAGATCTTTCTCATGGTTTTGCCTCCGGTGATCGGAGTTATCTC 524
Query 485 CGGTGCTGTCTTCACGGTGTTCCCTAGTAGACGTCATGGAATTGGGAATCCCTCGGACCA 544
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 525 CGGTGCTGTTTTCACGGTGTTCCCTAGTAGACGTCACGGAATTGGGAATCCCTCGGACCA 584
Query 545 CAATGAGGATGATGCTTCCGAGATAGAGAAATGAT-GTATAAAATTTCA-ACTAT 597
|| ||||||||||||||||||||| || || |||| ||||| |||| | |||||
Sbjct 585 CAGTGAGGATGATGCTTCCGAGAT-GA-AA-TGATAGTATATGATTTTATACTAT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28784166231
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5