BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930118

Length=451
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21570.1 | Symbols:  | unknown protein; Has 43 Blast hits to...   555    2e-157


> AT3G21570.1 | Symbols:  | unknown protein; Has 43 Blast hits 
to 43 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:7600150-7600883 REVERSE 
LENGTH=734
Length=734

 Score =  555 bits (300),  Expect = 2e-157
 Identities = 398/446 (89%), Gaps = 3/446 (1%)
 Strand=Plus/Plus

Query  1    TTTATTGTTTCTCTTTAAAGATGGGAACTGAAATTATCCGGCCTCAAAATTGTTTGGTTG  60
            ||| || ||| |||||| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct  158  TTTGTT-TTTATCTTTAGAGATGGGAACCGAAATTATCAGGCCTCAAAATTGTTTGGTTG  216

Query  61   ACCGGATGAGAGATTCTCCGGCAACACTTTTTAACTCCCGGAAGAATCATTTTCACCGGA  120
            |||||||||||||||||||||| ||  ||||||||||||||| |||||||||||||||||
Sbjct  217  ACCGGATGAGAGATTCTCCGGCGACTTTTTTTAACTCCCGGAGGAATCATTTTCACCGGA  276

Query  121  AACCACCTCTCCGACCTGCCCAAAGGAGAAGATTCGGTTCTGATGAATTCAGAACGATGA  180
            |||| ||||||  |||||  |||||||||||||||||||| ||||| |||||||||| ||
Sbjct  277  AACCGCCTCTCAAACCTGATCAAAGGAGAAGATTCGGTTCCGATGAGTTCAGAACGACGA  336

Query  181  CGAAGAACGTTGTTAGGAGAAGAGGAGAGTCTTTCGATTCATTTTCAAACATCAAAGTTC  240
            | |||||| |||||||||||| |||||||||||| || ||||| ||||||||||||||||
Sbjct  337  CAAAGAACATTGTTAGGAGAAAAGGAGAGTCTTTTGACTCATTCTCAAACATCAAAGTTC  396

Query  241  GGAAGTATTCACCGGAGGTTTCTGCCGACGATATTTATGCTGGATCATCCATTTTCGTTG  300
            | || ||||||||||||||||||||||| ||||||||||| ||||| || || |||| ||
Sbjct  397  GTAAATATTCACCGGAGGTTTCTGCCGATGATATTTATGCCGGATCTTCGATATTCGCTG  456

Query  301  TTTCTCCGGCGCCGAGCTCGTTACCTTTGCCGTCGTTT-TCGAGGAAGAATGCGAAAAGT  359
            |||| || ||||| |||||||||||||||||||| ||| |||| |||||| |||||||| 
Sbjct  457  TTTCCCCAGCGCCAAGCTCGTTACCTTTGCCGTC-TTTCTCGAAGAAGAAAGCGAAAAGC  515

Query  360  CAGATTGTTGTCGTTTCCGTTGATGACTCGGCGTCTCAAGATCTCCGGCGACTTCTCCGG  419
            ||| |||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||
Sbjct  516  CAGGTTGTTGTCGTTTCCATTGATGACTCGGCCTCTCAAGATCTCCGGAGACTTCTCCGG  575

Query  420  CTAGAGTTTTGAGAGAATTAATTAAA  445
            ||| ||||||||||  || |||||||
Sbjct  576  CTAAAGTTTTGAGACTATCAATTAAA  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21464328823


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5