BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930123
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21610.1 | Symbols: | Acid phosphatase/vanadium-dependent h... 893 0.0
> AT3G21610.1 | Symbols: | Acid phosphatase/vanadium-dependent
haloperoxidase-related protein | chr3:7609143-7610711 REVERSE
LENGTH=869
Length=869
Score = 893 bits (483), Expect = 0.0
Identities = 543/571 (95%), Gaps = 8/571 (1%)
Strand=Plus/Plus
Query 1 TTTCGCGGTTG--TATCGCCGAATGGACGAGGTGATGACAGCGGCGGACGCCGGTTCGTT 58
||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 90 TTTCGCGGTTGTATATCGCC-TATGGACGAGGTGATGACAGCGGCGGACGTTGGTTCGTT 148
Query 59 AGGTGGCGGAAACAGGGCGTTGTACGGATCTCCTCCGTCGCAGAATCTGTTTCCTCACAA 118
||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 149 AGGTGGCGGCAATAGGGCGTTGTACGGATCTCCTCCGTCGCATAATCTGTTTCCTCACAA 208
Query 119 TCTCCCAATCTTCTCCGCTTTTCTTGCCTTCGCTCTTGCTCAGTTCCTCAAAGTTTTCAC 178
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 209 TCTCCCAATCTTCTCCGCTTTTCTTGCCTTCGCTCTTGCTCAGTTCCTCAAAGTCTTCAC 268
Query 179 TAATTGGTACAAAGAAAAGAGGTGGGACTCTAAACGTATGATTAGCTCTGGTGGAATGCC 238
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 269 TAATTGGTACAAAGAAAAGAGGTGGGACTCTAAACGTATGATTAGTTCTGGTGGAATGCC 328
Query 239 TTCTTCGCATTCCGCTACCGTCACTGCCTTAGCTGTTGCCATTGGCCTTGAAGAAGGAGC 298
|||||| ||||| ||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 329 TTCTTCTCATTCTGCTACTGTCACTGCCTTAGCTGTTGCCATTGGCTTTGAAGAAGGAGC 388
Query 299 AGGAGCACCAGCTTTCGCTATCGCAGTTGTCTTAGCTTGCGTTGTTATGTATGATGCCTC 358
|||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 389 TGGAGCACCAGCTTTTGCTATTGCAGTTGTCTTGGCTTGCGTTGTTATGTATGATGCCTC 448
Query 359 CGGTGTCAGGCTTCATGCTGGTCGTCAAGCCGAGCTGCTGAATCAAATTGTTTGTGAGTT 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 TGGTGTCAGGCTTCATGCTGGTCGTCAAGCCGAGCTGCTGAATCAAATTGTTTGTGAGTT 508
Query 419 TCCTCCGGAGCATCCATTATCAACAGTTAGACCATTGCGTGAACTGCTTGGCCACACTCC 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 TCCTCCGGAGCATCCATTATCAACAGTTAGACCATTGCGTGAACTGCTTGGCCACACTCC 568
Query 479 TATCCAGGTTGCAGCAGGTGGGATTTTAGGATGCATGGTAGCTTATTTAATGAGGAGCAC 538
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
Sbjct 569 TATCCAGGTTGCAGCAGGTGGGATTTTAGGATGCGTGGTAGCTTACTTAATGAGGAGCTC 628
Query 539 AAGCTAGTC--TCTCT--ACACAAAGAACAA 565
||||||||| ||||| |||||| ||||||
Sbjct 629 AAGCTAGTCAGTCTCTCTACACAA-GAACAA 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5