BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930126
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21640.1 | Symbols: TWD1, UCU2, FKBP42, ATFKBP42 | FKBP-type... 1757 0.0
> AT3G21640.1 | Symbols: TWD1, UCU2, FKBP42, ATFKBP42 | FKBP-type
peptidyl-prolyl cis-trans isomerase family protein | chr3:7618930-7621477
REVERSE LENGTH=1342
Length=1342
Score = 1757 bits (951), Expect = 0.0
Identities = 1065/1121 (95%), Gaps = 3/1121 (0%)
Strand=Plus/Plus
Query 1 CAGGTTGATTTGGAAAAATAATGGATCAATCTCTGGAGCATCAAACTCAAACACATGACC 60
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 131 CAGGTTGATTTGG-GAAATAATGGATGAATCTCTGGAGCATCAAACTCAAACACATGACC 189
Query 61 AAGAGGA-CGAAATAGTTACTGAAGGAAGTGCTGTTGTGCATGGTGAGCCTTCTCAAGAT 119
|||| || |||||||||||||||||||||||| ||||||||| ||||||| ||||||||
Sbjct 190 AAGA-GAGCGAAATAGTTACTGAAGGAAGTGCCGTTGTGCATAGTGAGCCATCTCAAGAG 248
Query 120 GGTAGTGTTCCTCCTAAAGTTGATAGTGAAGCTGAGGTTTTGGATGAGAAAGTCAGTAAG 179
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 249 GGTAATGTTCCTCCTAAAGTTGATAGTGAAGCTGAGGTCTTGGATGAGAAAGTCAGTAAG 308
Query 180 CAGATCATAAAGGAAGGTCATGGTTCCAAACCATCCAAGTACTCGACATGCTTTTTACAC 239
||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 309 CAGATTATAAAGGAAGGTCACGGTTCCAAACCATCCAAGTACTCTACATGCTTTTTGCAC 368
Query 240 TATAGGGCATGGACCAAAAATTCGCAGCATAAATTTGAAGATACATGGCAAGAGCAGCAA 299
|| ||||||||||||||||| |||||||| |||||||| ||||||||||| |||||||||
Sbjct 369 TACAGGGCATGGACCAAAAACTCGCAGCACAAATTTGAGGATACATGGCATGAGCAGCAA 428
Query 300 CCTATTGAATTGGTTCTTGGAAAAGAGAAAAAAGAATTGGCCGGTTTGGCCATCGGTGTT 359
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 429 CCTATTGAATTGGTTCTTGGAAAAGAGAAAAAAGAACTAGCCGGTTTAGCCATCGGTGTT 488
Query 360 TCTAGCATGAAGTCTGGTGAACGTGCGCTTGTGCATGTTGGCTGGGAATTGGCTTATGGG 419
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 489 GCTAGCATGAAGTCTGGTGAACGTGCGCTTGTGCATGTTGGCTGGGAATTAGCTTATGGG 548
Query 420 AAAGAAGGAAACTTTTCTTTTCCGAATGTTCCACCTATGGCGGACTTGTTGTATGAGGTT 479
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 549 AAAGAAGGAAACTTTTCTTTTCCGAATGTTCCACCTATGGCAGACTTGTTATATGAGGTG 608
Query 480 GAAGTTATTGGATTTGATGAAACAAAGGAGGGAAAGGCTCGCAGTGATATGACTGTGGAG 539
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 609 GAAGTTATTGGGTTTGATGAAACAAAGGAGGGAAAAGCTCGCAGTGATATGACTGTAGAG 668
Query 540 GAAAGGATTGGTGCAGCAGACAGAAGAAAAATGGATGGAAATTCTCTGTTTAAGGAGGAG 599
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 669 GAAAGGATTGGTGCAGCAGACAGAAGAAAAATGGATGGGAATTCTCTTTTTAAGGAGGAG 728
Query 600 AAACTGGAGGAGGCCATGCAACAGTATGAAATGGCCATAGCATACATGGGGGACGATTTT 659
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AAACTGGAGGAAGCCATGCAACAGTATGAAATGGCCATAGCATACATGGGGGACGATTTT 788
Query 660 ATGTTTCAGCTGTATGGGAAGTATCAGGATATGGCTTTAGCAGTTAAAAACCCATGCCAC 719
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 789 ATGTTTCAGCTGTATGGGAAGTACCAGGATATGGCTTTAGCAGTTAAAAACCCATGCCAT 848
Query 720 CTAAACATAGCAGCTTGCCTCATCAAGCTAAAACGATACGATGAAGCAATTGGTCACTGC 779
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 849 CTTAACATAGCAGCTTGCCTCATCAAACTAAAACGATACGATGAAGCAATTGGTCACTGC 908
Query 780 AACATTGTGTTGACAGAAGAAGAGAAAAACCCAAAAGCACTGTTCAGAAGAGGGAAGGCA 839
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 909 AACATTGTGTTGACAGAAGAAGAGAAAAACCCAAAAGCACTGTTCAGAAGAGGGAAAGCA 968
Query 840 AAGGCAGAGCTAGGACAAATGGACTCAGCACGTGATGATTTCCGAAAGGCGCAAAAGTAT 899
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 969 AAGGCAGAGCTAGGACAGATGGACTCAGCACGTGATGATTTCCGAAAGGCACAAAAGTAT 1028
Query 900 GCTCCTGATGACAAGGCGATTAGAAGAGAGCTACGAGCACTTGCAGAGCAAGAGAAAGCT 959
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GCTCCTGACGACAAGGCGATTAGAAGAGAGCTACGAGCACTTGCAGAGCAAGAGAAAGCC 1088
Query 960 TTGTACCAAAAGCAGAAAGAAATGTACAAAGGAATATTCAAAGGGAAAGAAGAAGGCGGT 1019
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1089 TTGTACCAAAAGCAGAAAGAAATGTACAAAGGAATATTCAAAGGGAAAGATGAAGGTGGT 1148
Query 1020 GCCAAGGCAATGAGCCGTAACTGGTTGATACTGTTATGGCAATGGTTGGTTTCCCTTTTC 1079
|| ||| ||| ||||| | ||||||||| |||||||||||||||| ||||||||||||
Sbjct 1149 GCTAAGTCAAAGAGCCTTTTTTGGTTGATAGTGTTATGGCAATGGTTTGTTTCCCTTTTC 1208
Query 1080 TCCCGGATCTTTCGACGCCACAGAGTTAAAGCAGATTGATG 1120
||||| ||||||||||||||||||||||||||||||| |||
Sbjct 1209 TCCCGTATCTTTCGACGCCACAGAGTTAAAGCAGATTAATG 1249
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55873206585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5