BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930127
Length=1671
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21650.1 | Symbols: | Protein phosphatase 2A regulatory B s... 2538 0.0
AT4G15415.2 | Symbols: ATB' GAMMA | Protein phosphatase 2A regu... 1219 0.0
> AT3G21650.1 | Symbols: | Protein phosphatase 2A regulatory B
subunit family protein | chr3:7621569-7624076 REVERSE LENGTH=2338
Length=2338
Score = 2538 bits (1374), Expect = 0.0
Identities = 1576/1673 (94%), Gaps = 16/1673 (1%)
Strand=Plus/Plus
Query 1 GGGTTTGTGCCAATAGTTAGAAATGATCAAGCAGATATTTGGGAAATTACCTCGAAAGCC 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 565 GGGTTTGTGCCAATAGTTAGAAATGATCAAACAGATATTTGGGAAATTACCTAGAAAGCC 624
Query 61 TTCCAAATCTTTGCAGAATGATTCTAATGGTGAAGGAGGTG-T--TAACTCTTATTATGC 117
||||||||| ||||||||||| || |||||||||||||||| | ||| |||||||||||
Sbjct 625 TTCCAAATCATTGCAGAATGACTCCAATGGTGAAGGAGGTGTTAATAATTCTTATTATGC 684
Query 118 TTCGAATTCGAGTAGTAGTAGTATCTCGAAACCTTCTTCAGCATCTTCCAAATCATCATC 177
|||||||||||||| || ||||||||| |||||||||||| ||||||| |||||||||||
Sbjct 685 TTCGAATTCGAGTACTACTAGTATCTCTAAACCTTCTTCAACATCTTCGAAATCATCATC 744
Query 178 AGCCTCGGGTTCACGTGTAGCTAATGGAACTCTTGCTCCTAACTCATTGAGCTCT-A-A- 234
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 745 AGCCTCGGGTTCGCGTGTAGCTAATGGAACTCTTGCTCCTAACTCAATGAGCTCTAATAG 804
Query 235 CAAGACTAATCAAGGGAAGAAACCATTGGGAGGAGATGCTGTTGTACAAGCTGGACCGTT 294
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 805 GAATACTAATCAAGGGAAGAAACCATTGGGAGGAGATGCTGTTGTACAAGCTGGACCG-T 863
Query 295 TTCC-CCTTCTGGTGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATCTCGG 353
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 864 TTCCGTCTTCTGGTGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATATCGG 923
Query 354 AGAAACCGAATCTCTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTCTTTGACTTTAGTG 413
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 924 AGAAACCGAATCTCTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTTTTTGACTTTAGTG 983
Query 414 ATCCATCGAAGAACCTAAAAGAGAAAGAGATTAAGCGGCAGACATTGCTTGAGCTCGTTG 473
|||| || |||||||| || ||||||||||||||| ||||||||||||||||||| ||||
Sbjct 984 ATCCGTCTAAGAACCTTAAGGAGAAAGAGATTAAGAGGCAGACATTGCTTGAGCTTGTTG 1043
Query 474 ATTATGTTGCATCAGTTGGTGTGAAGTTTAATGATGTTGCGATGCAAGAGCTCACAAAGA 533
|||||||||||||||||||| | |||||||| |||||| ||||||||||| | || ||||
Sbjct 1044 ATTATGTTGCATCAGTTGGTTTTAAGTTTAACGATGTTTCGATGCAAGAGTTAACGAAGA 1103
Query 534 TGGTAGCGATTAATCTGTTTAGAACGTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTG 593
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1104 TGGTAGCGGTTAATCTGTTTAGAACTTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTG 1163
Query 594 AAATGCATGATATGGATGATGAGGAACCTTCGTTGGAGCCAGCTTGGCCTCATATTCAAG 653
|||| ||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||
Sbjct 1164 AAATACATGATATGGATGATGAAGAACCTTCTTTGGAGCCAGCTTGGCCTCATGTTCAAG 1223
Query 654 TTGTGTATGAGATT-TTGCTCAGATTCGTGGCTTCTCCCATGACTGACGCAAAGCTTGCA 712
|||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1224 TTGTGTATGAGATTCTT-CTCAGATTCGTGGCTTCTCCCATGACTGATGCAAAGCTTGCC 1282
Query 713 AAGAGATATATTGACCATTCCTTTGTCTTGAAGCTGTTAGACTTGTTTGATTCTGAAGAT 772
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1283 AAGAGATATATTGACCATTCTTTTGTCTTGAAGCTCTTAGACTTGTTTGATTCTGAAGAT 1342
Query 773 CAAAGAGAGAGGGAATATTTGAAAACTATTCTGCATCGGGTCTACGGGAAGTTCATGGTG 832
|||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||
Sbjct 1343 CAAAGAGAGAGGGAATATCTAAAAACTATTCTGCATCGGGTGTACGGGAAGTTCATGGTG 1402
Query 833 CATCGACCCTATATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATTTCCGAGACT 892
|||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1403 CATCGACCTTACATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATATCCGAGACT 1462
Query 893 GAAAAGCATAATGGCATTGCAGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGGTTT 952
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1463 GAAAAGCATAATGGCATTGCGGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGTTTT 1522
Query 953 GCTTTGCCTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCAC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 GCTTTGCCTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCAC 1582
Query 1013 AAGCCTAAATGTTCATCGGTCTATTTCCAACAGCTTTCGTATTGCATAGTTCAGTTTGTA 1072
||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1583 AAGCCTAAATGTTCATCAGTCTATCACCAACAGCTTTCGTATTGCATTGTTCAGTTTGTA 1642
Query 1073 GAAAAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGCCTTTTAAAATATTGGCCTGTG 1132
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1643 GAAAAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGTCTTTTAAAATATTGGCCTGTG 1702
Query 1133 ACTAACAGCTCAAAGGAAGTAATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAGGCAACG 1192
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1703 ACTAACAGCTCAAAGGAAGTTATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAAGCAACT 1762
Query 1193 CAAGCCGCTGAGTTTCAGCGCTGTATGGTCCCTTTATCCCGACAAATTGCTCGATGCCTC 1252
||||||||||||||||| || |||||||| || |||||||||||||||||||||||||||
Sbjct 1763 CAAGCCGCTGAGTTTCAACGTTGTATGGTTCCATTATCCCGACAAATTGCTCGATGCCTC 1822
Query 1253 AACAGTTTGCATTTTCAGGTTGCTGAAAGAGCATTGTTTCTATGGAACAACGATCATATA 1312
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1823 AACAGTTCACATTTCCAGGTTGCTGAAAGAGCATTGTTTCTATGGAACAACGATCACATA 1882
Query 1313 AGAAACCTGATCACTCAGAACCATAAAGTAATAATGCCTATAGTCTTCCCAGCTCTCGAG 1372
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1883 AGAAACCTGATCACTCAGAACCATAAAGTGATAATGCCTATAGTCTTCCCAGCTCTTGAG 1942
Query 1373 AGAAACACGCGAGGACACTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAA 1432
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1943 AGAAACACGCGTGGACATTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAA 2002
Query 1433 GTATTCTGCGACATTGACCAAGTTCTTTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAA 1492
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 GTATTATGCGAGATTGACCAAGTTCTTTTCGACGAGTGTTTAGCCAAATTCCAAGTAGAA 2062
Query 1493 GAAGAGAATAAAACAGAGGTTAAAGCGAAACGGGAAAGAACATGGCAGCGGTTAGAAGAT 1552
|||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2063 GAAGTGAATAAAACAGAGGTTAAAGCGAAACGGGAAAGGACATGGCAACGGTTAGAAGAT 2122
Query 1553 TTAGCAACTTCAAAGACCGTTGTAACCAACGAGACAATGCTGGTTCCAAGATTTGTGTCC 1612
||||| ||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 2123 TTAGCTACTTCAAAGACCGTTGTAACCAACGAGGCAGTACTGGTTCCAAGATTTGTGTCC 2182
Query 1613 TCAGTCAATCTTGC-A-A-GCAGCTCTGAGTCCACAAA--C-TAGTAGGCTCT 1659
|||||||||||| | | | ||||||||||||||||| | |||||||||||
Sbjct 2183 TCAGTCAATCTTACTACAAGCAGCTCTGAGTCCACAGGGTCGTAGTAGGCTCT 2235
> AT4G15415.2 | Symbols: ATB' GAMMA | Protein phosphatase 2A regulatory
B subunit family protein | chr4:8817031-8819693 FORWARD
LENGTH=2456
Length=2456
Score = 1219 bits (660), Expect = 0.0
Identities = 1121/1341 (84%), Gaps = 41/1341 (3%)
Strand=Plus/Plus
Query 307 TGGGGTTTATGAGGCTTTGCCTAGCTTTAGAGATGTTCCTATCTCGGAGAAACCGAATCT 366
||| |||||||| || ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct 771 TGGAGTTTATGAAGCATTGCCAAGCTTTAGAGATGTTCCTACCTCGGAGAAACCTAATCT 830
Query 367 CTTTATCGGGAAGTTGAGTATGTGCTGTGTTGTCTTTGACTTTAGTGATCCATCGAAGAA 426
|||||| ||||||||||||||| || ||||| || ||||| | |||||| ||||||||
Sbjct 831 GTTTATCAAGAAGTTGAGTATGTGTTGCGTTGTGTTCGACTTCAATGATCCGTCGAAGAA 890
Query 427 CCTAAAAGAGAAAGAGATTAAGCGGCAGACATTGCTTGAGCTCGTTGATTATGTTGCATC 486
|| | |||||||||||| ||| | ||||| ||||||||||| ||||||||| ||||| |
Sbjct 891 TCTGAGAGAGAAAGAGATAAAGAGACAGACTTTGCTTGAGCTTGTTGATTATATTGCAAC 950
Query 487 AGTTGGTGTGAAGTTTAATGATGTTGCGATGCAAGAGCTCAC-AAAGATGG-TAG-CGAT 543
||| | ||||| | ||||| ||| ||||||||| | | |||| ||| | | | |
Sbjct 951 GGTTTCTACAAAGTTGAGTGATGCTGCAATGCAAGAGATTGCGAAAG-TGGCT-GTTG-T 1007
Query 544 TAATCTGTTT-AGAACGTTTCCTTCTGCGAATCACGAGAGTAAAATTCTTGAAATGCATG 602
|||||| ||| || ||||||||||||||||||||||||||||| ||||| |||| || ||
Sbjct 1008 TAATCT-TTTCAGGACGTTTCCTTCTGCGAATCACGAGAGTAAGATTCTCGAAACGCTTG 1066
Query 603 ATATGGATGATGAGGAACCTTCGTTGGAGCCAGCTTGGCCTCATATTCAAGTTGTGTATG 662
|| ||||||||||||||||| | || ||||| |||||||||||| |||||||||| ||||
Sbjct 1067 ATGTGGATGATGAGGAACCTGCTTTAGAGCCGGCTTGGCCTCATCTTCAAGTTGTCTATG 1126
Query 663 AGATT-TTGCTCAGATTCGTGGCTTCTCCCATGACTGACGCAAAGCTTGCAAAGAGATAT 721
|| || || || ||||| ||||| || || |||||||| |||||||||||||||||||||
Sbjct 1127 AGCTTCTT-CTTAGATTTGTGGCCTCGCCTATGACTGATGCAAAGCTTGCAAAGAGATAT 1185
Query 722 ATTGACCATTCCTTTGTCTTGAAGCTGTTAGACTTGTTTGATTCTGAAGATCAAAGAGAG 781
||||||||||| |||||||||||||| || || |||||||| |||||||| || ||||||
Sbjct 1186 ATTGACCATTCATTTGTCTTGAAGCTCTTGGATTTGTTTGACTCTGAAGACCAGAGAGAG 1245
Query 782 AGGGAATATTTGAAA-ACTATTCTGCATCGGGTCTACGGGAAGTTCATGGTGCATCGACC 840
||||||||| | ||| || ||||| |||||| | |||||||| ||||||||||| |||||
Sbjct 1246 AGGGAATATCT-AAAGACCATTCTTCATCGGATATACGGGAAATTCATGGTGCACCGACC 1304
Query 841 CTATATCAGAAAGGCGATAAACAATATCTTCTACAGATTCATTTCCGAGACTGAAAAGCA 900
|| ||||||||||||||| ||||||||||||||||||||||||| || || ||||||||
Sbjct 1305 CTTTATCAGAAAGGCGATCAACAATATCTTCTACAGATTCATTTTTGAAACCGAAAAGCA 1364
Query 901 TAATGGCATTGCAGAGTTGCTAGAGATTCTTGGAAGTATAATTAATGGGTTT-GCTTTGC 959
||| || |||||||||||||| ||||| || ||||||||||| || || ||| ||||| |
Sbjct 1365 TAACGGTATTGCAGAGTTGCTTGAGATACTAGGAAGTATAATCAACGG-TTTCGCTTTAC 1423
Query 960 CTTTAAAAGAAGAGCACAAGCTCTTCCTTTTGCGAGCCTTGATTCCTCTCCACA-AGCCT 1018
| |||||||||||||| ||||||||||| | || || |||||||| ||||||| | |||
Sbjct 1424 CGTTAAAAGAAGAGCATAAGCTCTTCCTAATCCGGGCATTGATTCCACTCCACAGA-CCT 1482
Query 1019 AAATGTTCATCGGTCT-ATT-TCCAACAGCTTTCGTATTGCATAGTTCAGTTTGTAGA-A 1075
|||||| |||| | || || || |||||||||| |||||||| |||||||||||||| |
Sbjct 1483 AAATGTGCATCTG-CTTATCATC-AACAGCTTTCTTATTGCATTGTTCAGTTTGTAGAGA 1540
Query 1076 AAGGACTTCAAGCTCGCTGATACCGTTATTAGAGGCCTTTTAAAATATTGGCCTGTGACT 1135
||| |||||||||| |||||||| || |||||||| ||| |||| |||||||||||||||
Sbjct 1541 AAG-ACTTCAAGCTTGCTGATACGGTCATTAGAGGACTTCTAAAGTATTGGCCTGTGACT 1599
Query 1136 AACAGCTCAAAGGAAGTAATGTTTCTTGGAGAGTTAGAAGAAGTCTTGGAGGCAACGCAA 1195
|| || ||||||||||| ||||||||||||||||| |||||||| ||||| ||||| |||
Sbjct 1600 AATAGTTCAAAGGAAGTTATGTTTCTTGGAGAGTTGGAAGAAGTTTTGGAAGCAACTCAA 1659
Query 1196 GCCGCTGAGTTTCAGCGCTGTATGGTCCCTTTATCCCGACAAATTGCTCGATGCCTCAAC 1255
|| |||||||||||||| |||||||| ||||||| || ||||| ||| |||||||||||
Sbjct 1660 GCAGCTGAGTTTCAGCGATGTATGGTTCCTTTATTTCGTCAAATCGCTAGATGCCTCAAC 1719
Query 1256 AGTTTGCATTTTCAGGTTGCTGAAAGAGCAT-TGTTTCTATGGAACAACGATCATATAAG 1314
|||| ||||||||||| |||||||| || | | |||||||||||||||||||| |||||
Sbjct 1720 AGTTCACATTTTCAGGTGGCTGAAAGGGC-TCTATTTCTATGGAACAACGATCACATAAG 1778
Query 1315 AAACCTGATCACTCAGAACCATAAAGTAATAATGCCTATAGTCTTCCCAGCTCTCGAGAG 1374
||||||||| ||||| ||||||||||| |||||||| || || ||||| ||| | |||||
Sbjct 1779 AAACCTGATTACTCAAAACCATAAAGTGATAATGCCCATTGTGTTCCCGGCTATGGAGAG 1838
Query 1375 AAACACGCGAGGACACTGGAACCAAGCAGTTCAAAGTCTGACTATAAACGTGAGGAAAG- 1433
|||||| || || || ||||||||||||||||| ||||||||| | || ||||| ||||
Sbjct 1839 AAACACACGGGGGCATTGGAACCAAGCAGTTCAGAGTCTGACTTTGAATGTGAG-AAAGG 1897
Query 1434 TATT--CTGCGACATTGACCAAGTTCT-TTTCGACGAGTGTTTAGCCAAATTCCAAGTAG 1490
|| | | | |||| |||||| |||| ||| || || || |||||||| ||||||| ||
Sbjct 1898 TAATGGCAGAGACA--GACCAAATTCTGTTT-GATGAATGCTTAGCCAAGTTCCAAGAAG 1954
Query 1491 AAGAAGAGAATAAAACAGAGGTTAAAGCGAAACGGGAAAG-AACATGGCAGCGGTTAGAA 1549
| |||| |||| |||| |||||| ||| ||||| ||| | ||||||| ||| || |||
Sbjct 1955 ATGAAGCGAATGAAACCGAGGTTGTAGCCAAACGAGAA-GCAACATGGAAGCTTTTGGAA 2013
Query 1550 GATTTAGCAACTTC-AAAGACCGTTGTAACCAACGAGACAATGCTGGTTCCAAGATTTGT 1608
|| |||||| |||| ||| |||| || ||||||| || |||| || || ||||| |
Sbjct 2014 GAGTTAGCAGCTTCGAAAT-CCGT---AAGCAACGAGGCAGTGCTCGTCCCCCGATTT-T 2068
Query 1609 G-TCCTCAGTCAATCTTGCAA 1628
|| ||||| | ||||||||
Sbjct 2069 CATCTTCAGTTACTCTTGCAA 2089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82579896525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5