BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930130

Length=401
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   510    3e-144


> AT3G21680.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: N-terminal protein myristoylation; 
LOCATED IN: cellular_component unknown; EXPRESSED 
IN: root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal 
differentiation and expansion stage; Has 34 Blast hits to 
34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:7633494-7633853 REVERSE LENGTH=360
Length=360

 Score =  510 bits (276),  Expect = 3e-144
 Identities = 332/360 (92%), Gaps = 0/360 (0%)
 Strand=Plus/Plus

Query  22   ATGGGGAATTGTCTGCGACACGACAATGCCATTGCCGGAAAAGAGAAAGACGATCTCGAG  81
            ||||||||||| ||  |||||||||||| | ||||| |||||||||||||||||||||| 
Sbjct  1    ATGGGGAATTGCCTAAGACACGACAATGGCGTTGCCAGAAAAGAGAAAGACGATCTCGAT  60

Query  82   CCCGAGCCGCTGGTTAAGTTATTGGAAGAAGGCAAAACGAGTTACAATGGTGAAGAAGAA  141
            || ||||||||||| ||||||||||||||||| |||||||||| |  ||| |||||||||
Sbjct  61   CCGGAGCCGCTGGTAAAGTTATTGGAAGAAGGTAAAACGAGTTTCCGTGGGGAAGAAGAA  120

Query  142  AGTGAAAGATCAACGGAAGAAGTATCTAAGGTGATAAGGATTAAAGTTGTGGTGACaaaa  201
            |||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||| 
Sbjct  121  AGTGAAAGATCAACGGAAGAAGAATCTAAAGTGGTAAGGATAAAAGTTGTGGTGACAAAG  180

Query  202  aaaGAACTTAGACAAATCTTGGGTCACAAGAATGGTATCAACTCCATTGAACAGTTGGTT  261
            |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct  181  AAAGAACTTAGACAGATCTTGGGTCACAAGAATGGTATAAACTCCATTCAACAGTTAGTT  240

Query  262  CATGTTCTCAAAGATAGTGGCAGAAACATCTCCAGGGCTAATTATGAAGAAGATGAGAAA  321
            |||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct  241  CATGTTCTCAAAGATAGTGGCAGAAACATCTCCATGGCTAGTTATGAAGAAGATGAGAAA  300

Query  322  GAAGAAGGTAATGAAAATTGGAGGCCTTCGTTAGAAAGCATTCCTGAGAGTCATTATTGA  381
            || |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  301  GAGGAAGGTGATGAAAATTGGAGGCCTACGTTAGAAAGCATTCCTGAGAGTCATTATTGA  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18950941373


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5