BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930135
Length=283
Score E
Sequences producing significant alignments: (Bits) Value
AT3G16895.1 | Symbols: | Cysteine-rich protein | chr3:5770868-... 272 1e-72
> AT3G16895.1 | Symbols: | Cysteine-rich protein | chr3:5770868-5771544
REVERSE LENGTH=434
Length=434
Score = 272 bits (147), Expect = 1e-72
Identities = 247/293 (84%), Gaps = 16/293 (5%)
Strand=Plus/Plus
Query 2 GTTCACAGAAAAAATTACTATGGCTAATACTAAAACCTTGGTGGCTTGTTTCCTTGTAAT 61
||||| ||||||| ||| ||||| || ||| ||||| |||||| | ||||||||||||||
Sbjct 10 GTTCATAGAAAAATTTATTATGGGTAGTACGAAAACTTTGGTGACATGTTTCCTTGTAAT 69
Query 62 AATACTTGCAGTTTCGTTGTCTAACAACAACGTTTTGGCTTCAGATGCAGGGATCGAAAA 121
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 70 AATACTTGCAGTTTCGTTGCCTAACAACAACGTTTTGGCTTCAGATGCAAGGATCGAAGG 129
Query 122 CTTCTCATTTGACAACTGCCACATTAGGTGTTACG--GA---C-GG---GATGAATGTA- 171
|||||| |||||||||||| | |||||||||| || || | || ||||||||||
Sbjct 130 CTTCTCTTTTGACAACTGCAATATTAGGTGTTCCGAAGATTACTGGAATGATGAATGTAA 189
Query 172 TGAACTACTGTTTTAAAATTGGATTT-AAGAAAGGTGGACAGTGTGGTTCTATTTGTATT 230
| || ||||| ||| | ||| ||| || ||||||||||||||||||||| |||||||
Sbjct 190 T-AAGGACTGTCTTAGAGCTGGCTTTCAA-AAAGGTGGACAGTGTGGTTCTCCTTGTATT 247
Query 231 ACATGTCCTA-TGAAATGTTGTTGCCAAATGTAATACAAACTTATATA-CCAT 281
||||||| | ||||||||||||| |||| |||||||||||||||| | ||||
Sbjct 248 CCATGTCC-AGTGAAATGTTGTTGTCAAAAGTAATACAAACTTATAAATCCAT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13019346991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5