BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930141
Length=1031
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21770.1 | Symbols: | Peroxidase superfamily protein | chr3... 1530 0.0
> AT3G21770.1 | Symbols: | Peroxidase superfamily protein | chr3:7673276-7674839
FORWARD LENGTH=1237
Length=1237
Score = 1530 bits (828), Expect = 0.0
Identities = 969/1037 (93%), Gaps = 10/1037 (1%)
Strand=Plus/Plus
Query 3 CAAAATCAAGGTAACT-C-A-ATGACGACGATGAAGCAATTGAATATTGCGGTTGCGGTT 59
||||||| |||||||| | | |||| |||||||| |||||| ||||||||||||| ||||
Sbjct 49 CAAAATCGAGGTAACTACTAGATGAAGACGATGACGCAATTAAATATTGCGGTTGTGGTT 108
Query 60 GCAGTGACAGTTCTTATTGGAATGTTGGGATCATCAGAGGCTCAACTTCAAATGAATTTC 119
| |||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 109 GTAGTGACGGTTCTTATTGGAATGTTGAGATCATCGGAGGCTCAACTTCAAATGAATTTC 168
Query 120 TACGCGAAGAGCTGTCCAAACGCAGAGAAAATCATTTCTGACCATATTCAAAATCATATC 179
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 169 TACGCGAAGAGCTGTCCAAACGCAGAGAAAATCATTTCAGATCATATTCAAAATCATATC 228
Query 180 C-CTAATGGTCCTTCTCTTGCAGCTCCTCTCATCAGGATGCACTTCCATGATTGCTTCGT 238
| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 229 CAC-AATGGTCCTTCTCTTGCAGCTCCTCTCATCCGAATGCACTTCCATGATTGCTTCGT 287
Query 239 TAGGGGATGTGATGGATCGGTGTTGATAAATTCAACATCTGGGAACGCAGAGAGAGATGC 298
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 288 TAGGGGATGTGACGGATCGGTGTTGATAAATTCAACATCTGGTAACGCAGAGAGAGATGC 347
Query 299 ACCACCGAATCTAACACTTAGAGGATTCGGTTTCGTAGAAAGGATTAAGGCTCTTCTTGA 358
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 348 ACCACCGAATCTAACACTTAGAGGATTCGGTTTCGTGGAAAGGATTAAGGCTCTTCTTGA 407
Query 359 AAAAGTGTGTCCTAAGACTGTTTCTTGCGCTGATATCATCGCTTTGACCGCTAGAGACGC 418
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 408 AAAAGTGTGTCCTAAGACTGTTTCTTGCGCAGATATCATTGCTTTGACTGCTAGAGACGC 467
Query 419 AGTTGTTGCCACCGGAGGTCCTTCATGGAATGTTCCAACGGGTAGAAGAGACGGTAGGAT 478
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 468 AGTTGTCGCCACCGGAGGTCCTTCATGGAGTGTTCCAACGGGTAGAAGAGACGGTAGGAT 527
Query 479 CTCAAATGTGACGGAGGCTACGAACAACATTCCACCGCCAACGAGTAATTTCACGACTTT 538
||||||| |||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 528 CTCAAATAAGACGGAGGCTACTAATAACATTCCACCTCCAACGAGTAATTTCACGACTTT 587
Query 539 ACAGCGACTTTTCAAAAACCAAGGCCTTAATCTCAAAGATCTTGTTCTGCTCTCCGGGGC 598
||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 588 ACAACGACTTTTCAAAAACCAAGGCCTTAATCTCAAGGACCTTGTTCTGCTCTCTGGGGC 647
Query 599 TCACACGATTGGTGTCTCGCATTGTTCTTCCATGAACACACGTCTCTACAACTTCTCGAC 658
|||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 648 TCACACGATTGGCGTCTCACATTGTTCTTCCATGAATACGCGTCTCTACAACTTCTCGAC 707
Query 659 TACAGTCAAACAAGATCCATCTCTCGATAGCCAGTACGCAGCTAATCTAAAGGCTAACAA 718
|||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 708 TACAGTAAAACAAGATCCATCTCTCGATAGCCAGTATGCAGCAAATCTAAAGGCTAACAA 767
Query 719 ATGTAAGAGCCTTAACGACAACACCACTATCCTCGAGATGGATCCCGGTAGTAGCAGAAC 778
||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 768 ATGTAAGAGCCTTAACGACAATAGCACCATCCTCGAGATGGATCCCGGTAGTAGCAGAAG 827
Query 779 CTTCGATCTCAGTTATTATAGGCTTGTCCTGAAGAGAAGAGGCTTTTTTCAGTCTGATTC 838
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||
Sbjct 828 CTTCGATCTCAGTTATTATAGGCTTGTCTTGAAGAGGAGAGGCTTGTTTCAGTCTGATTC 887
Query 839 TGCATTAACAACGAACTCAGCGACGTTGAAGATGATCAACAATTTGGTCAACGGTCCTGA 898
|||||||||||||||||||||||| |||||| |||||||| | |||||||||||| ||||
Sbjct 888 TGCATTAACAACGAACTCAGCGACTTTGAAGGTGATCAACGACTTGGTCAACGGTTCTGA 947
Query 899 ACAA-AAGTTTTACGAAGCTTTTGCTAAGTCAATGGAGAAGATGGGGAGAGTCAAAGTGA 957
| || ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 948 A-AAGAAGTTTTTCAAAGCTTTTGCTAAGTCAATGGAGAAGATGGGGAGAGTTAAAGTGA 1006
Query 958 AGACGGGCTCAGCCGGTGTGATCAGGACACGGTGTTCTGTCGCCGGAAGTTAGTTATCTT 1017
|||| |||||||| ||||||||||||||||||||||||||||| |||||||||| | |||
Sbjct 1007 AGACTGGCTCAGCTGGTGTGATCAGGACACGGTGTTCTGTCGCTGGAAGTTAGTAAGCTT 1066
Query 1018 --GG-TCGGAAAGTGGT 1031
|| |||||| |||||
Sbjct 1067 CAGGGTCGGAATGTGGT 1083
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50535551882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5