BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930146
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21810.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type fam... 1949 0.0
> AT3G21810.1 | Symbols: | Zinc finger C-x8-C-x5-C-x3-H type family
protein | chr3:7684430-7688616 FORWARD LENGTH=1840
Length=1840
Score = 1949 bits (1055), Expect = 0.0
Identities = 1253/1347 (93%), Gaps = 20/1347 (1%)
Strand=Plus/Plus
Query 1 GTTGTAAATTGGTTGGT-TA-ATCATGTCTGGGTCGAGTATGTATAAGACGAAGCTTTGT 58
||||| |||||||| | || |||||||||||||||||||||||||||||||||||||||
Sbjct 250 GTTGT-AATTGGTT--TATACATCATGTCTGGGTCGAGTATGTATAAGACGAAGCTTTGT 306
Query 59 ATTCTGTTCAAGAAGACTGGTGATTGTTCTAGGCCGAATTGTTCTTTTGCTCATGGAAAT 118
||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 307 ATTCTGTTCAATAAGACTGGTGATTGTTCGAGGCCGAATTGTACTTTTGCTCATGGAAAT 366
Query 119 GCTGAGCTTCGTCGTCCTGGAGAATCTTCATTCACTGGTAATGA--TTTCAA-A--GATA 173
|||||||||||||||||||| |||||||| || || || || || | ||| | ||||
Sbjct 367 GCTGAGCTTCGTCGTCCTGGCGAATCTTCTTTTACAGG-AA-GACGTCACAATATGGATA 424
Query 174 GCAACTCTCAGATTGGCAGACGTCACAATATGGATAGTGACTTAAGAGATAGACTTGGTA 233
| ||| | ||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GTGACT-TAAGA--GATAGACGTCACAATATGGATAGTGACTTAAGAGATAGACTTGGTA 481
Query 234 GACAGTTTTCTCCAGAGCGGAGACCATCTTTAGACAGAAGTGGAAGACGGGTACAAAGGT 293
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 482 GACAGTTTTCTCCAGAGCGGAGACCTTCCTTAGACAGAAGTGGAAGACGGGTACAAAGGT 541
Query 294 TTAGTGGACATGACAATCCTAGGCCATTTGAGAACCGAAGAGATAACGAGTACAGGGAGA 353
||||||||||||||||| ||| |||||||||||| ||||||||||| || ||||||||||
Sbjct 542 TTAGTGGACATGACAATTCTATGCCATTTGAGAATCGAAGAGATAAAGACTACAGGGAGA 601
Query 354 ACCGTAGATTTGATGAACGACGTAATTATGCTGGTGGTTTGAAAGTTGGGAATAGAATTG 413
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 602 ACCGTAGATTTGATGAACGACGTGATTATGCTGGTGGTTTGAAAGTTGGGAATAGGATTG 661
Query 414 AAGACAGGGCAGAAGATGGAAGAAATAAGTTTCAGGGTTACAATAATGTTCTAGAGGAGC 473
|||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||
Sbjct 662 AAGACAGGGCAGAAGATGGAAGAAATAAGTTTCATGGTTACAATAATGTTCTGGAAGAGC 721
Query 474 AGTTAAAAGACGTAGAGATGGATGTTAAGATGCTTACTGATGACAAACAACGATTGGAGG 533
|||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 722 AGTTAAAAGATGTAGAGATGGATGTTAAGATGCTAACTGATGACAAACTACGATTGGAGG 781
Query 534 CTTCCGTTGAAAGGAAGGCACACGAAGTAGACATTCTAAGC-TCTAGGATCCATGAGCTT 592
| |||||||||||||||||||| |||||||||||||| | | ||||||||||| ||||||
Sbjct 782 CGTCCGTTGAAAGGAAGGCACATGAAGTAGACATTCTTA-CTTCTAGGATCCAGGAGCTT 840
Query 593 GAGACTCAGTTGGATAGAGAGAAAGAGGAATGTAGGAGGATTACTTCAAACACAAAGAAA 652
||||| |||||||||||||||||||| |||||||||||||||||||||| | | ||||||
Sbjct 841 GAGACCCAGTTGGATAGAGAGAAAGATGAATGTAGGAGGATTACTTCAAGCTCGAAGAAA 900
Query 653 TTTGTGAAAGAATACAACCGTTTCTTGCGGGCACAAGATGATCTAAAGAGGTCAGAAGCC 712
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTTGTGAAAGAATATAACCGTTTCTTGCGGGCACAAGATGATCTAAAGAGGTCAGAAGCC 960
Query 713 CGTCTTCAGAAATTGGGAAACCAACTTAGTACATATCTTGCTGGAAGTGAAGGAAATAAT 772
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 961 CGTCTTCAGAAATTGGGAAACCAACTTAGTACGTATCTTGCTGGAAGTGAAGGCAATAAT 1020
Query 773 AGGGATGCAGGCGTGGATATTGTGAGTGATGACGAGAATAATGGTCGGAATTTGAGAACT 832
||||||| |||| ||||||||||||| ||||| |||| ||||||||||||||||||||||
Sbjct 1021 AGGGATGTAGGCCTGGATATTGTGAGCGATGAAGAGACTAATGGTCGGAATTTGAGAACT 1080
Query 833 GCTTGTGATCCACAGAATGAGCTGCAGAATACTTCTTCACTGTCCAGGAAAAAGCATTAT 892
|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GCTTGTGATCCACATAACGAGTTGCAGAATACTTCTTCACTGTCCAGGAAAAAGCATTAT 1140
Query 893 GTGGATCAATATACTACGAAAGAACCTGTTGAAGATGGCTTGATaggaagaggtgaagaa 952
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 GTGGATCAATATACTACGAAAGAACCTGTTGAAGATGGCTTGATAGGGAGAGGTGAAGAA 1200
Query 953 gagaaggtggagaaggagaagaagagaCC---TTGTTGGAATATGGTTTCTTCAAAATCA 1009
|||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1201 GAGAAGGTGGAGAATGAGAAGAAGAGACCACCTTGTTGGAATATGCTTTCTTCAAAATCA 1260
Query 1010 TATTCTGAAGAAGAAAGTGGAGCGTGGAACGATGAAGACACAATTAACAAGTCCTCGTCA 1069
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1261 TATTCTGAAGAAGAAAGTGGAGCGTGGAACGATGAAGACACAATTAACAGGTCCTCGTCA 1320
Query 1070 AAGGAAGACAACTGGAAAAGAAGAAGGATCTCTATTGGCACCTCCTCTACTGATAAGGTA 1129
||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||||||
Sbjct 1321 AAGGAAGACAATTGGAAAAGAAGAAGGTTCTCTATTGGCACCTCAGCTACCGATAAGGTT 1380
Query 1130 ATATCGTCTACGAGCATGGCAGCTCGGGAATATGATGATGATGCAGAATCTGAGGAAGAG 1189
|||| ||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1381 ATATTGTCTACGAGTATGGCAGCTCGGGAATTTGATGATGTTGCAGAATCTGAGGAAGAG 1440
Query 1190 AATCCCGAAGCAGCCAAAGGCTCTCCTCTCATATCTCTCCCTGCACCCCCACCTTTCAGA 1249
||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1441 AATCCCGAAGCAGCCAACGGCTCTCCTCTCATATCTCTTCCTCCACCCCCACCTTTCAGA 1500
Query 1250 GATGCCCATGTTCAGGGTGACGAGGATGATGTAAGCGTTGATGTGATGGAAGAGAAGAAA 1309
||||||||||||||| | |||||||||||||||| || ||||||||||||| ||||||||
Sbjct 1501 GATGCCCATGTTCAGAGAGACGAGGATGATGTAAACGGTGATGTGATGGAACAGAAGAAA 1560
Query 1310 GCCAATGAAGATGACTCCGTCTGATCA 1336
||| |||| ||||| ||||||||||||
Sbjct 1561 GCCTATGACGATGATTCCGTCTGATCA 1587
Score = 69.4 bits (37), Expect = 8e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 191 AGACGTCACAATATGGATAGTGACTTAAGAGATAGAC 227
|||||||||||||||||||||||||||||||||||||
Sbjct 406 AGACGTCACAATATGGATAGTGACTTAAGAGATAGAC 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66616123215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5