BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930148
Length=1064
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltr... 1391 0.0
> AT3G21820.1 | Symbols: ATXR2, SDG36 | histone-lysine N-methyltransferase
ATXR2 | chr3:7688434-7691504 REVERSE LENGTH=1677
Length=1677
Score = 1391 bits (753), Expect = 0.0
Identities = 880/941 (94%), Gaps = 10/941 (1%)
Strand=Plus/Plus
Query 52 TCGCCGCTCTTCTTTCTCCGCTTCCAACTCTCCAACAGCAGGAATATTTCAACAAGCTTA 111
|||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 104 TCGCCGCTCTTCTTGCTCCGCTTCCAACTCCCCAACTTCAGGAGTATTTCAACAAGCTTA 163
Query 112 TAACTAGTAGAAGATGCAATGGCATCGAAGTGAAACTA-AATGAAACCATTGGAAAAGGT 170
|||||||||||||||||||||| || ||||||||| | |||| ||||||||||||||||
Sbjct 164 TAACTAGTAGAAGATGCAATGGAATTGAAGTGAAA-AACAATGGAACCATTGGAAAAGGT 222
Query 171 GTTTATGTAAATTCAGAGTTTCAAGAAGATGAACTCATTTTGAAAGATCAGATTCTTGTT 230
||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 223 GTTTATGCAAATTCAGAGTTTGACGAAGATGAACTCATTTTGAAAGATGAGATTCTTGTT 282
Query 231 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTGGTTTGTAGTTTTTGTTTCCGGTTC 290
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 283 GGTATCCAACATTCTTCCAACAAGGTGGATTGTTTAGTTTGCAGTTTTTGTTTCCGGTTC 342
Query 291 GTTGGATCGATCGAGAAACAAATCGGCCGGAAACTCTATTTTAAGAATCTCGGTGTTTCT 350
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| |||
Sbjct 343 ATTGGATCAATCGAGAAACAAATCGGCAGGAAACTCTATTTCAAGAATCTCGGTGTCTCT 402
Query 351 GGTTGTTGTGACGGCGATTCATCTGAAAGCGGAGAAGATGAATGTGTGAAGTACAATGGA 410
||||||||||||| ||||||||| || ||||||||||||||||||||||||||||
Sbjct 403 GGTTGTTGTGACGACGATTCATC------CGAAGAAGATGAATGTGTGAAGTACAATGGA 456
Query 411 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCGGAAGGAGTTGTT 470
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 457 AATGAGGAACAATGTGGTGGAAGCAGTTCAAGCCATAATACTCTTCCAGAAGGAGTTGTT 516
Query 471 AGTTCTTTGATGAATGGCGAAATGGCATTGCCGTACACTGATATGTTTCCTTTGCCTTCG 530
||||||||||||||||| ||||||||||||||| | ||||||| |||||||||||| |||
Sbjct 517 AGTTCTTTGATGAATGGTGAAATGGCATTGCCGCATACTGATAAGTTTCCTTTGCCGTCG 576
Query 531 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGTAGTGAATCATGCGCAGAG 590
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 577 CCTCTTTCGTGTCCTGGAGGATGTCAGGAGGCTTTCTACTGCAGTGAATCATGCGCAGCG 636
Query 591 GCAGATTGGGAGAGTTCTCATTCTTTACTTTGCACTGGTGAGAAGTCTGAATCAA-ATTC 649
||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || |
Sbjct 637 GCAGATTGGGAGAGTTCTCATTCCTTACTTTGTACTGGTGAGAGGTCTGAATCAATAT-C 695
Query 650 TAGAGAGGCGCTTGGAGAGTTTATAAAACATGCTAATGATACAAATGATATTTTTCTCCT 709
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 696 TAGAGAGGCGCTTGGAGAGTTTATTAAACATGCTAATGATACCAATGATATTTTTCTCCT 755
Query 710 GGCTGCCAAGGCGATTGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 769
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 GGCTGCGAAGGCAATCGCCTTTACCATTCTAAGGTACAGGAAACTGAAAGCAGAACATGT 815
Query 770 AGACAAAAAAGCAAAACAAAGTGAGCCAAAGCAGTCCCTACTCTTGGAGGCATGGAAACC 829
||||||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 816 GGACAAAAAAGCGAAACAGAGTGAGCCAAAGCAGTCGCTTCTCTTGGAAGCATGGAAACC 875
Query 830 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATCGCATTGCCAGATGATGTTGA 889
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 876 AGTATCGATTGGATACAAAAGAAGGTGGTGGGACTGCATTGCATTGCCAGATGATGTTGA 935
Query 890 TCTTTCTGATGAAGGAGCCTTCAGGATGCAGATAAAGAATCTTGCATGTACGTCTTTGGA 949
|| | ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 936 TCCTACTGATGAAGGAGCCTTCAGGATGCAAATAAAGAACCTTGCGTGTACGTCTTTGGA 995
Query 950 GCTCCTGAAGACAGCCATATTTGACAAAGAATGTGAAGCCC 990
||||||||||| |||||||||||||||||||||||||||||
Sbjct 996 GCTCCTGAAGATAGCCATATTTGACAAAGAATGTGAAGCCC 1036
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52108165710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5