BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930150
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21860.1 | Symbols: ASK10, SK10 | SKP1-like 10 | chr3:769977... 455 2e-127
AT3G21850.1 | Symbols: ASK9, SK9 | SKP1-like 9 | chr3:7697089-7... 424 6e-118
AT3G21830.1 | Symbols: ASK8, SK8 | SKP1-like 8 | chr3:7693481-7... 383 9e-106
AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:163790... 311 5e-84
AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:164800... 300 1e-80
> AT3G21860.1 | Symbols: ASK10, SK10 | SKP1-like 10 | chr3:7699777-7700235
REVERSE LENGTH=459
Length=459
Score = 455 bits (246), Expect = 2e-127
Identities = 395/466 (85%), Gaps = 14/466 (3%)
Strand=Plus/Plus
Query 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86
||||||||||||| |||| | |||| |||||| |||||||| | || ||| || ||||
Sbjct 1 ATGTCGACGAAGAAGATCAT-ATTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAGA 59
Query 87 AGATGCCGCACGCCAATGCCAGATCATAAATCATATGATTGAGGACGATTGCGCCGATAG 146
||| |||||| |||||||||||| |||| |||||||| ||| |||||||| ||||||
Sbjct 60 AGAGGCCGCATGCCAATGCCAGACCATAGCTCATATGAGTGAAGACGATTGTACCGATA- 118
Query 147 A-GAAATCCCGCTTCCA-AACGTGACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTGC 204
| | ||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||
Sbjct 119 ATGGAATCCCGCTTCCAGAA-GTGACAGGCAAGATTCTTGAGATGGTGATCGAGTACTGC 177
Query 205 AAGAAGCACCACGTCGATGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAATGGGAC 264
|| |||||||||||||||| ||||| |||| | ||||||||||||||||||| ||||||
Sbjct 178 AACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGAGGATCTCAAGAAGTGGGAC 237
Query 265 GAA--AAGTTCATGGAAAAAGATCAATTAACGCTCTTTGATCTCATTAAT-GCTGCTAGT 321
|| || |||||||||||| |||||| ||| |||||||||||||| || ||||| | |
Sbjct 238 -AAGGAA-TTCATGGAAAAATATCAATCCACGATCTTTGATCTCATT-ATGGCTGCGAAT 294
Query 322 TACCTAGACATAC-AAAGCCTTCTTGATCTAGCATGCCAAACTGCCTCGGATATGAGCAA 380
|||||| |||| | |||||||||||||||||||||||||||| | | ||||||||| |||
Sbjct 295 TACCTAAACAT-CAAAAGCCTTCTTGATCTAGCATGCCAAACCGTCGCGGATATGATCAA 353
Query 381 AGCCAAAACTCTGGACCAGACTCGCGAATTCTTCAACATTGAGAATGATTTTACACCTGA 440
|| ||| ||| |||| || |||||| |||||||||||||||||||||||| ||||| |||
Sbjct 354 AGACAACACTGTGGAGCACACTCGCAAATTCTTCAACATTGAGAATGATTATACACATGA 413
Query 441 GGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGCTTTTGAATGA 486
||||||| |||| |||| || ||| ||||| || ||||||||||
Sbjct 414 GGAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGGGTTTTGAATGA 459
> AT3G21850.1 | Symbols: ASK9, SK9 | SKP1-like 9 | chr3:7697089-7697550
REVERSE LENGTH=462
Length=462
Score = 424 bits (229), Expect = 6e-118
Identities = 393/470 (84%), Gaps = 19/470 (4%)
Strand=Plus/Plus
Query 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86
||||||||||||| |||| | |||| |||||| |||||||| | || ||| || ||||
Sbjct 1 ATGTCGACGAAGAAGATCAT-ATTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAGA 59
Query 87 AGATGCCGCACGCCAATGCCAG---ATCATAAATCATATGATTGAGGACGATTGCGCCGA 143
||| |||||||||||||||||| |||||| |||||||| ||| | ||||| ||||
Sbjct 60 AGAGGCCGCACGCCAATGCCAGATTATCATAGCTCATATGAGTGAAAATGATTGTACCGA 119
Query 144 TAGA-GAAATCCCGCTTCCAAACGTGACAGGCAAGATTCTTGCGATGGTGCTCGAGTACT 202
|| | | |||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 120 TA-ATGGAATCCCTCTTCCAAACGTGACAGGCAAGATTCTTGCGATGGTGATCGAGTACT 178
Query 203 GCAAGAAGCACCACGTCGATGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAATGGG 262
|||| |||||||||||||||| ||||| |||| | ||||||| ||||||||||| ||||
Sbjct 179 GCAACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGATGATCTCAAGAAGTGGG 238
Query 263 ACGAAA-AGTTCATGGAAAAAGAT-CAATTAACGCTCTTTGATCTCATTAATGCTGCTAG 320
|| || ||||||||||||||||| || | ||| ||||||||||||| || ||||| |
Sbjct 239 AC-AAGGAGTTCATGGAAAAAGATACA-TCCACGATCTTTGATCTCATCAAGGCTGCGAA 296
Query 321 TTACCTAGACATACAAA-GCCTTCTTGATCTAGCATGCCAAACTGCCTCGGATATGAGCA 379
||||||| |||| |||| ||||| ||||||||||||||||||| | | |||| || | ||
Sbjct 297 TTACCTAAACAT-CAAAAGCCTTTTTGATCTAGCATGCCAAACCGTCGCGGAAATCATCA 355
Query 380 AAGCCAAAACTC-TGGACCAGACTCGCGAATTCTTCAACATTGAGAATGATTTTACACCT 438
||| ||| |||| || | |||| |||||||||||||||||||||||||||||| ||||||
Sbjct 356 AAGGCAACACTCCTG-AGCAGATTCGCGAATTCTTCAACATTGAGAATGATTTAACACCT 414
Query 439 GAGGAAGAAAAAGCTG-TTCTTAAGGACTATCAAAAGG-CTTTTGAATGA 486
||||||||| ||| | ||| || ||| || ||| || |||||||||||
Sbjct 415 GAGGAAGAAGCAGC-GATTCGTAGGGAGAAT-AAATGGGCTTTTGAATGA 462
> AT3G21830.1 | Symbols: ASK8, SK8 | SKP1-like 8 | chr3:7693481-7693939
REVERSE LENGTH=459
Length=459
Score = 383 bits (207), Expect = 9e-106
Identities = 384/468 (82%), Gaps = 18/468 (4%)
Strand=Plus/Plus
Query 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86
||||||||||| | |||| | ||||| |||||| || ||| ||||||||||||| ||||
Sbjct 1 ATGTCGACGAAAAAGATCAT-GTTGAAGAGCTCCGAGGGTAAAACGTTTGAGATTGAAGA 59
Query 87 AGATG-CCGCACGCCAATGCCAGATCATAAATCATATGATTGAGGACGATTGCGCCGATA 145
||| | |||||||||||||||||| |||| |||||||||||| | ||| || | ||||
Sbjct 60 AGA-GACCGCACGCCAATGCCAGACCATAGCTCATATGATTGAAGCCGAATGTACAGATA 118
Query 146 GA-GAAATCCCGCTTCCAAACG-TGACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTG 203
| | ||||| | || ||| | ||||| || ||||||||| ||||||| ||||||||||
Sbjct 119 -ACGTAATCCTGGTTTTAAA-GATGACAAGCGAGATTCTTGAGATGGTGATCGAGTACTG 176
Query 204 CAAGAAGCACCACGTCGATGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAATGGGA 263
||| |||||||||||||||| ||||| |||| | ||||||| |||||| |||| |||||
Sbjct 177 CAACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGATGATCTCGAGAAGTGGGA 236
Query 264 CGAA-AAGTTCATGGAAAAAGATCAATTAACGCTCTTTGATCTCATTAATGCTGCTAGTT 322
| || ||||||||||||||||| ||| ||| |||||| ||||| |||||||| | ||
Sbjct 237 C-AAGGAGTTCATGGAAAAAGATAAATCCACGATCTTTGCTCTCACCAATGCTGCGAATT 295
Query 323 ACCTAGACATAC-AAAGCCTTCTTGATCTAGCATGCCAAACTGCCTCGGATATGAGCAAA 381
|||| ||| || ||||||||||| |||||||| ||||||| | | ||||||||| ||||
Sbjct 296 TCCTAAACA-ACAAAAGCCTTCTTCATCTAGCAGGCCAAACCGTCGCGGATATGATCAAA 354
Query 382 GCCAAAACTCTGGACCAGACT-CGCGAATTCTTCAACATTGAGAATGATTTTACACCTGA 440
| ||| |||| | | |||| | ||||||||||||||||||||||||||||| ||||||||
Sbjct 355 GGCAACACTCCGAAGCAGA-TGCGCGAATTCTTCAACATTGAGAATGATTTAACACCTGA 413
Query 441 GGAAGAAAAAGCTG-TTCTTAAGGACTATCAAAAGG-CTTTTGAATGA 486
||||||| ||| | ||| || ||| || ||| || |||||||||||
Sbjct 414 GGAAGAAGCAGC-GATTCGTAGGGAGAAT-AAATGGGCTTTTGAATGA 459
> AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461
FORWARD LENGTH=459
Length=459
Score = 311 bits (168), Expect = 5e-84
Identities = 374/471 (79%), Gaps = 24/471 (5%)
Strand=Plus/Plus
Query 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86
||||| ||||||||||| | ||||| |||||| |||||||| |||||||| | ||||
Sbjct 1 ATGTCTTCGAAGATGATCGT-GTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGA 59
Query 87 AGATGCCGCACGCCAATGC-CAGATCATAAATCATATGATTGAGGACGATTGCGCCGATA 145
|| | ||| ||||| | |||| |||| |||||| |||| |||||||||| | |
Sbjct 60 AGCGGTAGCAATCCAAT-CGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCT- 117
Query 146 GA-GAAATCCCGCTTCCAAACGT-GACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTG 203
|| | |||||| ||| ||||||| || | |||||||||||| || ||| ||||||||||
Sbjct 118 GATGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTG 176
Query 204 CAAGAAGCACCACGTCGATGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAATGGG 262
|||||| ||||||||||| || ||||| ||| | | | || ||||||||||| || ||||
Sbjct 177 CAAGAAACACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAACTGGG 235
Query 263 ACGAAAAGTTCATGGAAAAAGATCAATTAACGC-TCTTTGATCTCATTAATGCTGCTAGT 321
|||| ||||||||||| || |||| || | ||||||| ||||| |||||| | |
Sbjct 236 ACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGAACTCATCCTTGCTGCGAAT 294
Query 322 TACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCAAACTGCCT-CGGATATGAG 377
||||| | ||||| |||| ||| |||||||| | |||||||||||| | |||| ||||
Sbjct 295 TACCTCA-ACATAAAAAG-CTTGCTTGATCTCA-CATGCCAAACTG-TTGCGGACATGAT 350
Query 378 CAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAACATTGAGAATGATTTTACA 435
||||| ||| |||| || ||| ||| | || | ||||||||||||||||||||||||
Sbjct 351 CAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAACATTGAGAATGATTTTACA 408
Query 436 CCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGCTTTTGAATGA 486
|||||||||||| ||||||||| |||||| ||||| |||||||||||||
Sbjct 409 CCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459
> AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:16480022-16480480
REVERSE LENGTH=459
Length=459
Score = 300 bits (162), Expect = 1e-80
Identities = 372/471 (79%), Gaps = 24/471 (5%)
Strand=Plus/Plus
Query 28 ATGTCGACGAAGATGATC-TCGTTGACGAGCTCTGATGGTCAAACGTTTGAGATCAAAGA 86
||||| ||||||||||| | ||||| |||||| |||||||| |||||||| | ||||
Sbjct 1 ATGTCTTCGAAGATGATCGT-GTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGA 59
Query 87 AGATGCCGCACGCCAATGC-CAGATCATAAATCATATGATTGAGGACGATTGCGCCGATA 145
|| | ||| ||||| | |||| |||| |||||| |||| |||||||||| | |
Sbjct 60 AGCGGTAGCAATCCAAT-CGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCT- 117
Query 146 GA-GAAATCCCGCTTCCAAACGT-GACAGGCAAGATTCTTGCGATGGTGCTCGAGTACTG 203
|| | |||||| ||| ||||||| || | |||||||||||| || ||| ||||||||||
Sbjct 118 GATGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGTGAAAGTGATCGAGTACTG 176
Query 204 CAAGAAGCACCACGTCGATGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAATGGG 262
|||||| |||||||||| || ||||| ||| | | | || ||||||||||| || ||||
Sbjct 177 CAAGAAATACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAAGTGGG 235
Query 263 ACGAAAAGTTCATGGAAAAAGATCAATTAACGC-TCTTTGATCTCATTAATGCTGCTAGT 321
|||| ||||||||||| || |||| || | ||||||| ||||| |||||| | |
Sbjct 236 ACGAGAAGTTCATGGATCTCGAACAATCCAC-CATCTTTGAACTCATCCTTGCTGCGAAT 294
Query 322 TACCT-AGACATACAAAGCCTT-CTTGATCT-AGCATGCCAAACTGCCT-CGGATATGAG 377
||||| | ||||| |||| ||| ||||||| | |||||||||||| | |||| ||||
Sbjct 295 TACCTCA-ACATAAAAAG-CTTGTTTGATCTCA-CATGCCAAACTG-TTGCGGACATGAT 350
Query 378 CAAAGCCAAAACTCTGGACCAGACTCG--CGAATTCTTCAACATTGAGAATGATTTTACA 435
||||| ||| |||| || ||| ||| | || | ||||||||||||||||||||||||
Sbjct 351 CAAAGGCAAGACTCCAGAGGAGATTCGTTC-AACT-TTCAACATTGAGAATGATTTTACA 408
Query 436 CCTGAGGAAGAAAAAGCTGTTCTTAAGGACTATCAAAAGGCTTTTGAATGA 486
|||||||||||| ||||||||| |||||| ||||| |||||||||||||
Sbjct 409 CCTGAGGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAATGA 459
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5