BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930151
Length=499
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21860.1 | Symbols: ASK10, SK10 | SKP1-like 10 | chr3:769977... 418 3e-116
AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:163790... 329 1e-89
AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:164800... 324 6e-88
> AT3G21860.1 | Symbols: ASK10, SK10 | SKP1-like 10 | chr3:7699777-7700235
REVERSE LENGTH=459
Length=459
Score = 418 bits (226), Expect = 3e-116
Identities = 386/463 (83%), Gaps = 12/463 (3%)
Strand=Plus/Plus
Query 21 ATGTCGGCGAAGATA-ATCA-AGTTGAAGAGCTCCGATGGTGAATCGTTTGAGATCAAAG 78
|||||| |||||| | |||| | |||||||||||||||||| | || || ||| || |||
Sbjct 1 ATGTCGACGAAGA-AGATCATA-TTGAAGAGCTCCGATGGTCACTCATTCGAGGTCGAAG 58
Query 79 AAGAGGCTGCACGCCAATCCCAGACCATATTTCATCTGATTGACGACGATTGCACCGATA 138
||||||| ||| |||||| |||||||||| |||| ||| ||| |||||||| |||||||
Sbjct 59 AAGAGGCCGCATGCCAATGCCAGACCATAGCTCATATGAGTGAAGACGATTGTACCGATA 118
Query 139 AAGAAATCCCGGTTCCA-AACGTGACAAGCAAGATTCTTTCGATGGTGGTCGAGTACTTA 197
| | ||||||| ||||| || |||||| ||||||||||| ||||||| |||||||||
Sbjct 119 ATGGAATCCCGCTTCCAGAA-GTGACAGGCAAGATTCTTGAGATGGTGATCGAGTACTGC 177
Query 198 AAGAAGCACCACGTCGGTGATGCTAACCCTTCCACCGACGAGGATCTCAAGAAGTGGGAC 257
|| ||||||||||||| || ||||| |||| | ||||||||||||||||||||||||||
Sbjct 178 AACAAGCACCACGTCGATGCCGCTAATCCTTGCTCCGACGAGGATCTCAAGAAGTGGGAC 237
Query 258 GCGGAGTTCATGCAAATCGATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATCAC 317
||| |||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 238 AAGGAATTCATGGAAAAATATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATTAC 297
Query 318 CTAAACATCAAAAGCCTTACT-GACCTAACATGCCAAACTGTCGCGGATATGATCAAAGA 376
|||||||||||||||||| || || ||| |||||||||| ||||||||||||||||||||
Sbjct 298 CTAAACATCAAAAGCCTT-CTTGATCTAGCATGCCAAACCGTCGCGGATATGATCAAAGA 356
Query 377 GGAA-ACTCCAAAACAGA-TCCGCCAACGCTTCAACATTGAGAATGATTTTACACCTGAG 434
|| ||| | || | || || || |||||||||||||||||||| ||||| ||||
Sbjct 357 C-AACACTGTGGAGCACACTC-GCAAATTCTTCAACATTGAGAATGATTATACACATGAG 414
Query 435 GAAGAAAAAGCTGTTCTTAAGAACTATCAAAAGGCTTTTGAAT 477
|||||| |||| |||| || | | ||||| || ||||||||
Sbjct 415 GAAGAAGAAGCGGTTCGTAGGGAGAATCAATGGGGTTTTGAAT 457
> AT4G34210.1 | Symbols: ASK11, SK11 | SKP1-like 11 | chr4:16379003-16379461
FORWARD LENGTH=459
Length=459
Score = 329 bits (178), Expect = 1e-89
Identities = 371/464 (80%), Gaps = 14/464 (3%)
Strand=Plus/Plus
Query 21 ATGTCGGCGAAGATAATCAAGTTGAAGAGCTCCGATGGTGAATCGTTTGAGATCAAAGAA 80
||||| ||||||| ||| ||||| ||||||||||||| | ||||||||| | |||||
Sbjct 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60
Query 81 GAGGCT-GCACGCCAATCCCAGACCATATTTCATCTGATTGACGACGATTGCACCGATAA 139
| || | ||| |||||| ||||||||| ||| || |||| ||||||||| | | |
Sbjct 61 GCGG-TAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGA 119
Query 140 AGAAATCCCGGTTCCAAACGT-GACAAGCAAGATTCTT-TCGATGGTGGTCGAGTACTTA 197
| |||||| || ||||||| || ||||||||||||| | || ||| |||||||||
Sbjct 120 TGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGT-GAAAGTGATCGAGTACTGC 177
Query 198 AAGAAGCACCACGTCGGTGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAGTGGGA 256
||||| |||||||||| || ||||| ||| | | | || ||||||||||| || |||||
Sbjct 178 AAGAAACACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAACTGGGA 236
Query 257 CGCGGAGTTCATGCAAATCGATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATCA 316
|| | |||||||| | |||| |||||||| |||||||| ||||| | ||||||||| |
Sbjct 237 CGAGAAGTTCATGGATCTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTA 296
Query 317 CCTAAACATCAAAAGCCTTAC-TGACCTAACATGCCAAACTGTCGCGGATATGATCAAAG 375
||| ||||| ||||| ||| | ||| || |||||||||||||| ||||| ||||||||||
Sbjct 297 CCTCAACATAAAAAG-CTTGCTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAG 355
Query 376 AGGAA-ACTCCAAAACAGATCCG-CCAACGCTTCAACATTGAGAATGATTTTACACCTGA 433
| || |||||| | |||| || |||| |||||||||||||||||||||||||||||
Sbjct 356 -GCAAGACTCCAGAGGAGATTCGTTCAAC-TTTCAACATTGAGAATGATTTTACACCTGA 413
Query 434 GGAAGAAAAAGCTGTTCTTAAGAACTATCAAAAGGCTTTTGAAT 477
||||||| ||||||||| |||| | ||||| |||||||||||
Sbjct 414 GGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAAT 457
> AT4G34470.1 | Symbols: ASK12, SK12 | SKP1-like 12 | chr4:16480022-16480480
REVERSE LENGTH=459
Length=459
Score = 324 bits (175), Expect = 6e-88
Identities = 370/464 (80%), Gaps = 14/464 (3%)
Strand=Plus/Plus
Query 21 ATGTCGGCGAAGATAATCAAGTTGAAGAGCTCCGATGGTGAATCGTTTGAGATCAAAGAA 80
||||| ||||||| ||| ||||| ||||||||||||| | ||||||||| | |||||
Sbjct 1 ATGTCTTCGAAGATGATCGTGTTGATGAGCTCCGATGGTCAGTCGTTTGAGGTGGAAGAA 60
Query 81 GAGGCT-GCACGCCAATCCCAGACCATATTTCATCTGATTGACGACGATTGCACCGATAA 139
| || | ||| |||||| ||||||||| ||| || |||| ||||||||| | | |
Sbjct 61 GCGG-TAGCAATCCAATCGCAGACCATAGCGCATATGGTTGAAGACGATTGCGTTGCTGA 119
Query 140 AGAAATCCCGGTTCCAAACGT-GACAAGCAAGATTCTT-TCGATGGTGGTCGAGTACTTA 197
| |||||| || ||||||| || ||||||||||||| | || ||| |||||||||
Sbjct 120 TGGAATCCCTCTTGCAAACGTGGA-AAGCAAGATTCTTGT-GAAAGTGATCGAGTACTGC 177
Query 198 AAGAAGCACCACGTCGGTGATGCTAACCCT-TCCACCGACGAGGATCTCAAGAAGTGGGA 256
||||| ||||||||| || ||||| ||| | | | || ||||||||||| ||||||||
Sbjct 178 AAGAAATACCACGTCGACGAGGCTAATCCTAT-CTCTGAAGAGGATCTCAACAAGTGGGA 236
Query 257 CGCGGAGTTCATGCAAATCGATCAATCCACGATCTTTGATCTCATTATGGCTGCGAATCA 316
|| | |||||||| | |||| |||||||| |||||||| ||||| | ||||||||| |
Sbjct 237 CGAGAAGTTCATGGATCTCGAACAATCCACCATCTTTGAACTCATCCTTGCTGCGAATTA 296
Query 317 CCTAAACATCAAAAGCCTT-ACTGACCTAACATGCCAAACTGTCGCGGATATGATCAAAG 375
||| ||||| ||||| ||| ||| || |||||||||||||| ||||| ||||||||||
Sbjct 297 CCTCAACATAAAAAG-CTTGTTTGATCTCACATGCCAAACTGTTGCGGACATGATCAAAG 355
Query 376 AGGAA-ACTCCAAAACAGATCCG-CCAACGCTTCAACATTGAGAATGATTTTACACCTGA 433
| || |||||| | |||| || |||| |||||||||||||||||||||||||||||
Sbjct 356 -GCAAGACTCCAGAGGAGATTCGTTCAAC-TTTCAACATTGAGAATGATTTTACACCTGA 413
Query 434 GGAAGAAAAAGCTGTTCTTAAGAACTATCAAAAGGCTTTTGAAT 477
||||||| ||||||||| |||| | ||||| |||||||||||
Sbjct 414 GGAAGAAGAAGCTGTTCGTAAGGAGAATCAATGGGCTTTTGAAT 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23810985678
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5