BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg930154 Length=1141 Score E Sequences producing significant alignments: (Bits) Value AT3G21880.1 | Symbols: | B-box type zinc finger protein with C... 688 0.0 > AT3G21880.1 | Symbols: | B-box type zinc finger protein with CCT domain | chr3:7706748-7708093 FORWARD LENGTH=1095 Length=1095 Score = 688 bits (372), Expect = 0.0 Identities = 508/571 (89%), Gaps = 19/571 (3%) Strand=Plus/Plus Query 463 CTTATTCCATGGTGCCACACAGCTTCAATGT-CACTCAGAATTTCAGTGATCAA-TTGTC 520 ||||||||||||| ||||||| | ||| | | ||||||||||||||||||| || ||||| Sbjct 407 CTTATTCCATGGTACCACACAACATCAGT-TACACTCAGAATTTCAGTGAT-AATTTGTC 464 Query 521 TTTCTTTTCCGTGGAATCTAAGGGATATCCTGATTTGGTTCTTAAACTTGAAGAAGGCGA 580 |||||||||| |||||||||||||||||||||| |||||||||||||||||||||| || Sbjct 465 TTTCTTTTCCACGGAATCTAAGGGATATCCTGATATGGTTCTTAAACTTGAAGAAGGAGA 524 Query 581 AGAAGATTTATGTGAAGGGCTTAACTTTGACAATGCGCCGTTAAACTTTGACGTTGGAGA 640 ||||||| ||||||||||||||||||| || |||| || |||||||||||||| ||||| Sbjct 525 AGAAGATCTATGTGAAGGGCTTAACTTGGATGATGCACCATTAAACTTTGACGTAGGAGA 584 Query 641 TGATATTATCGGATGTTCTTTAGAAGAACCCATAGAACCGGACCATACAGTACCAAATTG 700 |||||||||||||||||| | ||||| || |||||||||||||||||| ||||||||||| Sbjct 585 TGATATTATCGGATGTTCATCAGAAGTACACATAGAACCGGACCATACGGTACCAAATTG 644 Query 701 CCTACTGATCGACAAGAATAACACATCC-G--TTACCGCCTCAAACTTTACTATAGACAA 757 |||| |||| ||||||| |||||||||| | |||||| ||| ||||||||| ||||||| Sbjct 645 CCTATTGATTGACAAGACTAACACATCCAGCTTTACCGGCTCCAACTTTACTGTAGACAA 704 Query 758 GGCTTTTGAGGCATCGTCACCAGGACAACAAATGAACATCAACACTGGACTTCCGCTTCC 817 |||| | ||||||||| ||||||| || ||||||||||||||||||||||||| |||||| Sbjct 705 GGCTCTAGAGGCATCGCCACCAGGTCAGCAAATGAACATCAACACTGGACTTCAGCTTCC 764 Query 818 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCGCTTAACATCTCCAACGTCACAGG 877 |||||||||||||||||||||||||||||||||||| ||||||| | | || | || Sbjct 765 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCTCTTAACA--T-C-AC-T----GG 815 Query 878 TGAAAGCAATGCAGCTGATTACCAGGATTGTGGGATGCCTCCAGGGTTTATAACGAGTGA 937 ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 816 TGAAAACAATGCAGCTGATTACCAGGATTGTGGGATGTCTCCAGGGTTTATAATGAGTGA 875 Query 938 AGCACCATGGGAATCGAATCTTGAAGTTAGTTGTCCACAAGCAAGTACTCAAG-CTAAAT 996 ||| ||||||||| ||||| ||||||||||||||||||||||||| | | || |||| | Sbjct 876 AGCGCCATGGGAAACGAATTTTGAAGTTAGTTGTCCACAAGCAAGAAA-CGAGGCTAAGT 934 Query 997 TGAGATACATGGAGAAGAAATTAA-GCGCTC 1026 ||||||||| |||||||||||||| |||||| Sbjct 935 TGAGATACAAGGAGAAGAAATTAAAGCGCTC 965 Score = 536 bits (290), Expect = 2e-151 Identities = 363/399 (91%), Gaps = 2/399 (1%) Strand=Plus/Plus Query 21 ATGGAGCCAAAGTGTGACCACTGTGCAACTTCACAAGCAGTGATTTACTGCAAATCCGAT 80 |||||||||||||||||||| |||||||| || |||||| |||||||||||||||||||| Sbjct 1 ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGAT 60 Query 81 TTGGCTAAACTATGCCAAAACTGCGACTTCCACGTACACTCTGCGAATCCTCTATCTCAT 140 |||||||||||||||| |||||||||| |||| |||||||||||||||||||| ||||| Sbjct 61 TTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCAC 120 Query 141 AGACAC-TCACGCTCTTTGATCTGCCAGAAATGCTTCTCACAGCCAGCCGTAATCCGCTG 199 || ||| | |||||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 121 AGGCACAT-ACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTG 179 Query 200 TCTCGGTGAGAAGGTTTCATATTGCCAAAGATGTCATTGGCACGCAAGCAACTGCTCGGA 259 ||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| ||||| Sbjct 180 TCTCGACGAGAAGGTTTCATACTGCCAAGGATGTCATTGGCACGAAAGCAACTGTTCGGA 239 Query 260 TTTAGGACACAGAGTTCAGAGGTTGAACCCTTTCTCTGGTTGTCCTTCTCCAACAGATTT 319 |||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct 240 GTTAGGACACAGAGTTCAGAGCTTGAATCCTTTCTCTGGTTGTCCTTCTCCTACAGATTT 299 Query 320 TGTCAAAATGTGGTCTTCAATTCTTGAACCTTCTGTCTCTAGTTTGGTTAGTCCGTTTGT 379 | || ||||||||||||||||||||||||| ||||||| | ||| |||||||||| || Sbjct 300 TAACAGAATGTGGTCTTCAATTCTTGAACCTCCTGTCTCCGGCTTGCTTAGTCCGTTCGT 359 Query 380 TGGTTCTTTGCCCTTGAATGATCCCAATAATACCATGTT 418 ||||||||| ||||||||||||| ||| ||||||||||| Sbjct 360 TGGTTCTTTTCCCTTGAATGATCTCAACAATACCATGTT 398 Score = 159 bits (86), Expect = 4e-38 Identities = 92/95 (97%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 1027 CAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAATTATG 1086 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1001 CAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAGTTATG 1060 Query 1087 ATTATGACCCATCATCACCGACGACAAACAATTGA 1121 ||||||| ||||||||||||||||| ||||||||| Sbjct 1061 ATTATGATCCATCATCACCGACGACGAACAATTGA 1095 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55973607675 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5