BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930154
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21880.1 | Symbols: | B-box type zinc finger protein with C... 688 0.0
> AT3G21880.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr3:7706748-7708093 FORWARD LENGTH=1095
Length=1095
Score = 688 bits (372), Expect = 0.0
Identities = 508/571 (89%), Gaps = 19/571 (3%)
Strand=Plus/Plus
Query 463 CTTATTCCATGGTGCCACACAGCTTCAATGT-CACTCAGAATTTCAGTGATCAA-TTGTC 520
||||||||||||| ||||||| | ||| | | ||||||||||||||||||| || |||||
Sbjct 407 CTTATTCCATGGTACCACACAACATCAGT-TACACTCAGAATTTCAGTGAT-AATTTGTC 464
Query 521 TTTCTTTTCCGTGGAATCTAAGGGATATCCTGATTTGGTTCTTAAACTTGAAGAAGGCGA 580
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 465 TTTCTTTTCCACGGAATCTAAGGGATATCCTGATATGGTTCTTAAACTTGAAGAAGGAGA 524
Query 581 AGAAGATTTATGTGAAGGGCTTAACTTTGACAATGCGCCGTTAAACTTTGACGTTGGAGA 640
||||||| ||||||||||||||||||| || |||| || |||||||||||||| |||||
Sbjct 525 AGAAGATCTATGTGAAGGGCTTAACTTGGATGATGCACCATTAAACTTTGACGTAGGAGA 584
Query 641 TGATATTATCGGATGTTCTTTAGAAGAACCCATAGAACCGGACCATACAGTACCAAATTG 700
|||||||||||||||||| | ||||| || |||||||||||||||||| |||||||||||
Sbjct 585 TGATATTATCGGATGTTCATCAGAAGTACACATAGAACCGGACCATACGGTACCAAATTG 644
Query 701 CCTACTGATCGACAAGAATAACACATCC-G--TTACCGCCTCAAACTTTACTATAGACAA 757
|||| |||| ||||||| |||||||||| | |||||| ||| ||||||||| |||||||
Sbjct 645 CCTATTGATTGACAAGACTAACACATCCAGCTTTACCGGCTCCAACTTTACTGTAGACAA 704
Query 758 GGCTTTTGAGGCATCGTCACCAGGACAACAAATGAACATCAACACTGGACTTCCGCTTCC 817
|||| | ||||||||| ||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 705 GGCTCTAGAGGCATCGCCACCAGGTCAGCAAATGAACATCAACACTGGACTTCAGCTTCC 764
Query 818 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCGCTTAACATCTCCAACGTCACAGG 877
|||||||||||||||||||||||||||||||||||| ||||||| | | || | ||
Sbjct 765 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCTCTTAACA--T-C-AC-T----GG 815
Query 878 TGAAAGCAATGCAGCTGATTACCAGGATTGTGGGATGCCTCCAGGGTTTATAACGAGTGA 937
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 816 TGAAAACAATGCAGCTGATTACCAGGATTGTGGGATGTCTCCAGGGTTTATAATGAGTGA 875
Query 938 AGCACCATGGGAATCGAATCTTGAAGTTAGTTGTCCACAAGCAAGTACTCAAG-CTAAAT 996
||| ||||||||| ||||| ||||||||||||||||||||||||| | | || |||| |
Sbjct 876 AGCGCCATGGGAAACGAATTTTGAAGTTAGTTGTCCACAAGCAAGAAA-CGAGGCTAAGT 934
Query 997 TGAGATACATGGAGAAGAAATTAA-GCGCTC 1026
||||||||| |||||||||||||| ||||||
Sbjct 935 TGAGATACAAGGAGAAGAAATTAAAGCGCTC 965
Score = 536 bits (290), Expect = 2e-151
Identities = 363/399 (91%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 21 ATGGAGCCAAAGTGTGACCACTGTGCAACTTCACAAGCAGTGATTTACTGCAAATCCGAT 80
|||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||
Sbjct 1 ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGAT 60
Query 81 TTGGCTAAACTATGCCAAAACTGCGACTTCCACGTACACTCTGCGAATCCTCTATCTCAT 140
|||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||
Sbjct 61 TTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCAC 120
Query 141 AGACAC-TCACGCTCTTTGATCTGCCAGAAATGCTTCTCACAGCCAGCCGTAATCCGCTG 199
|| ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 121 AGGCACAT-ACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTG 179
Query 200 TCTCGGTGAGAAGGTTTCATATTGCCAAAGATGTCATTGGCACGCAAGCAACTGCTCGGA 259
||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||
Sbjct 180 TCTCGACGAGAAGGTTTCATACTGCCAAGGATGTCATTGGCACGAAAGCAACTGTTCGGA 239
Query 260 TTTAGGACACAGAGTTCAGAGGTTGAACCCTTTCTCTGGTTGTCCTTCTCCAACAGATTT 319
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 GTTAGGACACAGAGTTCAGAGCTTGAATCCTTTCTCTGGTTGTCCTTCTCCTACAGATTT 299
Query 320 TGTCAAAATGTGGTCTTCAATTCTTGAACCTTCTGTCTCTAGTTTGGTTAGTCCGTTTGT 379
| || ||||||||||||||||||||||||| ||||||| | ||| |||||||||| ||
Sbjct 300 TAACAGAATGTGGTCTTCAATTCTTGAACCTCCTGTCTCCGGCTTGCTTAGTCCGTTCGT 359
Query 380 TGGTTCTTTGCCCTTGAATGATCCCAATAATACCATGTT 418
||||||||| ||||||||||||| ||| |||||||||||
Sbjct 360 TGGTTCTTTTCCCTTGAATGATCTCAACAATACCATGTT 398
Score = 159 bits (86), Expect = 4e-38
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1027 CAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAATTATG 1086
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1001 CAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAGTTATG 1060
Query 1087 ATTATGACCCATCATCACCGACGACAAACAATTGA 1121
||||||| ||||||||||||||||| |||||||||
Sbjct 1061 ATTATGATCCATCATCACCGACGACGAACAATTGA 1095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55973607675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5