BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg930157

Length=193
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703866-770...   252    1e-66


> AT3G21870.1 | Symbols: CYCP2;1 | cyclin p2;1 | chr3:7703866-7704829 
REVERSE LENGTH=710
Length=710

 Score =  252 bits (136),  Expect = 1e-66
 Identities = 152/160 (95%), Gaps = 0/160 (0%)
 Strand=Plus/Plus

Query  9    TGAAGATAACCCATGTTAACCGTAGCCGGAGACGATGAACTAGACCCGGTCGTGGGAGCA  68
            |||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct  5    TGAAGAGAACCCATGTTAACCGCAGCCGGAGACGATGAACTGGACCCGGTCGTGGGACCA  64

Query  69   GAGCCGCCAACGGAAGCAGCCACTCCAAGAGTGTTGACTATAATCTCCCATGTGATGGAG  128
            ||  || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  65   GAATCGGCAACGGAAGCAGCCACTCCAAGAGTGCTGACTATAATCTCCCATGTGATGGAG  124

Query  129  AAGCTCGTGGCACGAAACGAGTGGTTAGCTAAGCAAACTA  168
            ||||||||||||||||||||||||||||||||||||||||
Sbjct  125  AAGCTCGTGGCACGAAACGAGTGGTTAGCTAAGCAAACTA  164



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8551229670


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5