BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930164
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
AT3G29050.1 | Symbols: | receptor-like protein kinase-related ... 143 3e-33
> AT3G29050.1 | Symbols: | receptor-like protein kinase-related
| chr3:11039509-11040701 REVERSE LENGTH=723
Length=723
Score = 143 bits (77), Expect = 3e-33
Identities = 198/252 (79%), Gaps = 25/252 (10%)
Strand=Plus/Plus
Query 490 AGAAGCCGGCGCTGTATGCGGCTGGGGAGAAGAGGCTGGGGAAGAAGAAGTTGTACGTAA 549
|||| ||||| || |||||||| || ||||| ||| | || || |||||| | || ||||
Sbjct 461 AGAAACCGGCACTATATGCGGCAGGAGAGAAAAGGTTCGGAAATAAGAAGATCTATGTAA 520
Query 550 TGGTGCAGTGTATGCTTGACTTATCTGATAAGGG-TTGTGAGGAGTGTATGTCA-CATAA 607
|||| ||||||| || ||||||| || | |||| ||||| ||||||| || | |||||
Sbjct 521 TGGTTCAGTGTACGCATGACTTAACTCCT-AGGGCTTGTGTGGAGTGTGTG-AATCATAA 578
Query 608 TGT-CGTGC-ATTATCAAGATTGC--T----ATAAA-CA--A------AAACAAGGAGCT 650
||| || || ||| |||||||||| | ||||| || | ||| |||| |||
Sbjct 579 TGTCCG-GCAATT-TCAAGATTGCTATGAAGATAAACCAGTAGGTTTGAAAAAAGGTGCT 636
Query 651 AGAGTTTTAGGTAGGAGCTGTAACTTTAGGTTTGAGCTTTACCCTTTTGTTGAC-CAGAA 709
|||||||| |||||||||||||||||||||||||||| ||||||||||||| || | ||
Sbjct 637 AGAGTTTTGGGTAGGAGCTGTAACTTTAGGTTTGAGCGTTACCCTTTTGTTAACGCC-AA 695
Query 710 GAGCAGTCCTAA 721
|| |||||||||
Sbjct 696 GACCAGTCCTAA 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36168585840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5