BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930165
Length=1390
Score E
Sequences producing significant alignments: (Bits) Value
AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydr... 577 1e-163
AT3G21930.1 | Symbols: | Domain of unknown function (DUF26) | ... 422 6e-117
AT3G21920.1 | Symbols: | Domain of unknown function (DUF26) | ... 422 6e-117
AT1G55740.1 | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:... 337 2e-91
AT4G01265.1 | Symbols: | raffinose synthase family protein / s... 185 8e-46
> AT3G48000.1 | Symbols: ALDH2B4, ALDH2, ALDH2A | aldehyde dehydrogenase
2B4 | chr3:17716867-17720020 REVERSE LENGTH=2009
Length=2009
Score = 577 bits (312), Expect = 1e-163
Identities = 361/385 (94%), Gaps = 2/385 (1%)
Strand=Plus/Plus
Query 723 GAAAGGTCAAGAGTAATGTTGAGGTTTGTAGATTTGGTTGAGAAACACAGCGAAGAACTC 782
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 535 GAAAGGTCAAGAGTTTTGTTGAGGTTTGCAGATTTGGTTGAGAAACACAGCGAAGAGCTC 594
Query 783 GCGTCTCTAGAGACTTGGGACAATGGCAAGCCTTACCAACAATCCAAGACCGTAGAGATT 842
|||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 595 GCGTCTCTAGAGACATGGGACAATGGCAAGCCTTACCAACAATCCTTGACCGCAGAGATT 654
Query 843 CCAATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTA 902
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CCCATGTTTGCAAGATTGTTCCGTTACTATGCTGGATGGGCGGATAAGATTCATGGACTA 714
Query 903 ACAGTTCCAGTTGATGGAAACTATCATGTTCAAACATTGCATGAACCCATAGGTGTAGCT 962
||| |||||| ||||||||||||||| ||||| ||||| |||||||| ||||||||||||
Sbjct 715 ACAATTCCAGCTGATGGAAACTATCAAGTTCACACATTACATGAACCGATAGGTGTAGCT 774
Query 963 GGACAGATCATTCC-TGGGAATTTTCCGCTTTTGATGTTTGCTTGGAAAGTTGGTCCTAC 1021
||||||||||| || ||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 775 GGACAGATCATACCGTGG-AATTTTCCACTTTTGATGTTTGCTTGGAAAGTTGGTCCTGC 833
Query 1022 TCTTGCTTGTGGTAACACCACTGTCCTTAAAACCGCTGAGCAAACACCTCTCACGGCTTT 1081
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 834 TCTTGCTTGTGGTAACACCATTGTCCTCAAAACCGCTGAGCAAACACCTCTCACGGCTTT 893
Query 1082 CTATGCTGGCAAGCTTTTACTTGAA 1106
||||||||| |||||||| ||||||
Sbjct 894 CTATGCTGGAAAGCTTTTCCTTGAA 918
Score = 215 bits (116), Expect = 1e-54
Identities = 128/134 (96%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 1107 CTTGCTTTTACAGGATCGACTGATACAGTCAAAGTTATACTTGGATTGGCTGCCAACAGC 1166
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||
Sbjct 1009 CTTGCTTTTACAGGATCGACTGATACGGGGAAAGTTATACTTGGATTGGCTGCTAACAGC 1068
Query 1167 AATCTTAAGCCGGTAACTCTGGAACTTGGAGGGAAATCACCATTCATCGTATTCGAAGAT 1226
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1069 AATCTTAAGCCCGTAACTCTGGAACTTGGAGGGAAATCACCGTTCATCGTATTCGAAGAT 1128
Query 1227 GCTGATATTGATAA 1240
||||||||||||||
Sbjct 1129 GCTGATATTGATAA 1142
Score = 161 bits (87), Expect = 1e-38
Identities = 89/90 (99%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 1248 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CAATGTTGCTGCGCGGGGTCTCGGACATTTGTTCATGAGAAAGTGTATGATGAGTTTGTT 1245
Query 1308 GAGAAATCAAAGGCACGGGCATTGAAACGT 1337
||||||||||||||||| ||||||||||||
Sbjct 1246 GAGAAATCAAAGGCACGCGCATTGAAACGT 1275
> AT3G21930.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7723223-7724338 FORWARD LENGTH=903
Length=903
Score = 422 bits (228), Expect = 6e-117
Identities = 328/375 (87%), Gaps = 11/375 (3%)
Strand=Plus/Plus
Query 4 AAAATAAATCCAAAACAATGTATTCTTTATCCTCTGAATCAAAACGCTTCATTCTAGTCC 63
||||||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||||||
Sbjct 50 AAAATAAATTCAAAACAATGTATTCTTCATCATCTGTATCAAAACGCTTCGTTCTAGTCC 109
Query 64 CTATCT-TGGTCGTGGTGGCCGCACAACTCCTTCTCGTACACAGCGTTTCTTCACTAAAC 122
|||| | ||||||||||| || |||||||||| || |||| | ||||||||||||||||
Sbjct 110 CTAT-TGTGGTCGTGGTGACCACACAACTCCTCCTGGTACGTAACGTTTCTTCACTAAAC 168
Query 123 CTTACCAATTCGTATCTCCAGCACAAATGCTTAGTCAATCAAGGGAAATACAAGCCGGGA 182
||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct 169 CTTACCAATTCGTATCTTCACCACAAATGCGTAGTCAATCAAGGGAAATACAAGCCAGGA 228
Query 183 AGCCAGCACGAGAAAGCCCTCAATGATATCATACAAAGCTTTTC-AA-AA-GAT-----T 234
||| || |||||||| ||||| |||||||||| ||||||||||| || || ||| |
Sbjct 229 AGCAAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCGAATAAAGATAAAGAT 288
Query 235 -CGGAAGGTTTTCATACCGGTTTCAGCATGGAGGCCTATGGTAAAGAGCCTGATATAGTC 293
|| | ||||||| |||||||| ||||||| ||||||| |||||||| |||||||| |||
Sbjct 289 TCGTATGGTTTTCGTACCGGTTACAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 348
Query 294 GCCATCACCTACCAGTGTCGTATCGATTCTCGCGGGCCCAAGTGCCACTCCTGCGTTGTC 353
|||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 349 TCCATCACCTACCAGTGCCGTATCGACTCTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTC 408
Query 354 ACCGCCGGTTCTGAG 368
|| ||||||| ||||
Sbjct 409 ACGGCCGGTTATGAG 423
> AT3G21920.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7720639-7721744 FORWARD LENGTH=893
Length=893
Score = 422 bits (228), Expect = 6e-117
Identities = 328/375 (87%), Gaps = 11/375 (3%)
Strand=Plus/Plus
Query 4 AAAATAAATCCAAAACAATGTATTCTTTATCCTCTGAATCAAAACGCTTCATTCTAGTCC 63
||||||||| ||||||||||||||||| ||| |||| ||||||||||||| |||||||||
Sbjct 37 AAAATAAATTCAAAACAATGTATTCTTCATCATCTGTATCAAAACGCTTCGTTCTAGTCC 96
Query 64 CTATCT-TGGTCGTGGTGGCCGCACAACTCCTTCTCGTACACAGCGTTTCTTCACTAAAC 122
|||| | ||||||||||| || |||||||||| || |||| | ||||||||||||||||
Sbjct 97 CTAT-TGTGGTCGTGGTGACCACACAACTCCTCCTGGTACGTAACGTTTCTTCACTAAAC 155
Query 123 CTTACCAATTCGTATCTCCAGCACAAATGCTTAGTCAATCAAGGGAAATACAAGCCGGGA 182
||||||||||||||||| || ||||||||| ||||||||||||||||||||||||| |||
Sbjct 156 CTTACCAATTCGTATCTTCACCACAAATGCGTAGTCAATCAAGGGAAATACAAGCCAGGA 215
Query 183 AGCCAGCACGAGAAAGCCCTCAATGATATCATACAAAGCTTTTC-AA-AA-GAT-----T 234
||| || |||||||| ||||| |||||||||| ||||||||||| || || ||| |
Sbjct 216 AGCAAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCGAATAAAGATAAAGAT 275
Query 235 -CGGAAGGTTTTCATACCGGTTTCAGCATGGAGGCCTATGGTAAAGAGCCTGATATAGTC 293
|| | ||||||| |||||||| ||||||| ||||||| |||||||| |||||||| |||
Sbjct 276 TCGTATGGTTTTCGTACCGGTTACAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 335
Query 294 GCCATCACCTACCAGTGTCGTATCGATTCTCGCGGGCCCAAGTGCCACTCCTGCGTTGTC 353
|||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 336 TCCATCACCTACCAGTGCCGTATCGACTCTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTC 395
Query 354 ACCGCCGGTTCTGAG 368
|| ||||||| ||||
Sbjct 396 ACGGCCGGTTATGAG 410
> AT1G55740.1 | Symbols: AtSIP1, SIP1 | seed imbibition 1 | chr1:20835366-20838778
REVERSE LENGTH=2477
Length=2477
Score = 337 bits (182), Expect = 2e-91
Identities = 197/204 (97%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 520 GAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAGA 579
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 445 GAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAAA 504
Query 580 GCT-GTGATCCAACTGTTGACCAATTCGAGGGGAGTCATTTGGTTTTTGTGGCTGTTGGC 638
| | |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 505 G-TGGTGATCCAACCGTTGACCAATTCGAAGGGAGTCATTTGGTTTTTGTGGCTGCTGGC 563
Query 639 TCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAACATCTTCAGACA 698
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 564 TCCGACCCTTTTGATGTCATTACCAAAGCTGTCAAGGCTGTTGAACAACATCTTCAAACA 623
Query 699 TTTTCACACCGAGAGAGAAAGAAA 722
||||||||||||||||||||||||
Sbjct 624 TTTTCACACCGAGAGAGAAAGAAA 647
> AT4G01265.1 | Symbols: | raffinose synthase family protein /
seed imbibition protein-related | chr4:529822-531774 REVERSE
LENGTH=1274
Length=1274
Score = 185 bits (100), Expect = 8e-46
Identities = 115/122 (94%), Gaps = 2/122 (2%)
Strand=Plus/Plus
Query 520 GAGATTTTAGAGCTGTTCTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAGA 579
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 210 GAGATTTTAGAGCTGTTTTTCAAGGGAACGAGGCTAATGAGCTAGAGATTTGTCTTGAAA 269
Query 580 GCTG-TGATCCAACTGTTGACCAATTCGAGGGGAGTCATTTGGTTTTTGTGGCTGTTGGC 638
| || ||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 270 G-TGGTGATCCAACCGTTGACCAATTCGAGAGGAGTCATTTGGTTTTTGTGGCTGCTGGC 328
Query 639 TC 640
||
Sbjct 329 TC 330
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68473543380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5