BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930166
Length=532
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21930.1 | Symbols: | Domain of unknown function (DUF26) | ... 671 0.0
AT3G21920.1 | Symbols: | Domain of unknown function (DUF26) | ... 665 0.0
AT3G21910.1 | Symbols: | Domain of unknown function (DUF26) | ... 207 6e-53
AT3G21900.1 | Symbols: | Receptor-like protein kinase-related ... 84.2 1e-15
> AT3G21930.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7723223-7724338 FORWARD LENGTH=903
Length=903
Score = 671 bits (363), Expect = 0.0
Identities = 443/482 (92%), Gaps = 4/482 (1%)
Strand=Plus/Plus
Query 33 CTTCTTCGTAAGAGATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTT 92
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 424 CTTCTTCGTAAGAGATGTCCGAGATATAAAGAGGCAATAATATGGTACGACCAATGTCTT 483
Query 93 GTGGACTTTTCTTCGTTAGATACTTTTGGGCAGATCAATTACGACGACAACTTCTGTATG 152
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 484 GTGGAGTTTTCTTCGTTAGATACTTCTGGGCAGATCAATTACGACGACAACTTCTGTATG 543
Query 153 CCCAGCACGAAAAACCTGATCGGCGATTCGATTTCTTTTGAAGAAAGGTTGCGTCTCCTC 212
|| ||| |||| |||||||||||| |||| || ||| ||||||||||||||| |||||||
Sbjct 544 CCTAGCGCGAAGAACCTGATCGGCAATTCAATCTCTCTTGAAGAAAGGTTGCATCTCCTC 603
Query 213 GACAATCTGACAGAGATGGCCGTCACGAAAATAGATAGAAACATAAAAGGTATaaaaaaa 272
||||||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 604 AACAATCTTACAAAGATAGCCGTCACGAAAATAGATAAAAACATAGAAGGTATAAAAAAA 663
Query 273 GCAGTACTGTATGCGGCGGGGGAGAGGAGACTCGGGAAGAATAA-TCTGTACGGAATGGT 331
|||||||||||||||||||||||| ||||||||||| ||| || ||| |||||||||||
Sbjct 664 CCAGTACTGTATGCGGCGGGGGAGAAGAGACTCGGGACGAA-AAGTCTATACGGAATGGT 722
Query 332 GCAGTGCTCTGG-TGACTTATCTGTTCAGGGTTGTAATGAGTGTATGACATATTATACAG 390
||| || || || |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 723 GCAATGTTC-GGCTGACTTATCTGTTCAGGGTTGTAATGAGTGTATGTTATATTATATAG 781
Query 391 TGCATTTTCAAAATTGCTGGAAAAGCAAACAAGGAGTACGAGTTTTGAGTAGAAGCTGTA 450
||||||||||| | |||||| |||| |||||||||||| |||||||||||||||||||||
Sbjct 782 TGCATTTTCAAGAGTGCTGGGAAAGTAAACAAGGAGTAAGAGTTTTGAGTAGAAGCTGTA 841
Query 451 ACTTTAGGTATGAGCTTTACCCTTTTATCAACCCCAAGGGTCCTTACTATACCAAGTTCT 510
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 842 ACTTTAGGTATGAGCTTTACCCTTTTATTAGCCCCAAGGGTTCTTACTATACCAAGTTCT 901
Query 511 AA 512
||
Sbjct 902 AA 903
> AT3G21920.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7720639-7721744 FORWARD LENGTH=893
Length=893
Score = 665 bits (360), Expect = 0.0
Identities = 445/486 (92%), Gaps = 6/486 (1%)
Strand=Plus/Plus
Query 33 CTTCTTCGTAAGAGATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTT 92
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 411 CTTCTTCGTAAGAGATGTCCGAGATATAAAGAGGCAATAATATGGTACGACCAATGTCTT 470
Query 93 GTGGACTTTTCTTCGTTAGATACTTTTGGGCAGATCAATTACGACGACAACTTCTGTATG 152
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 471 GTGGAGTTTTCTTCGTTAGATACTTCTGGGCAGATCAATTACGACGACAACTTCTGTATG 530
Query 153 CCCAGCACGAAAAACCTGATCGGCGATTCGATTTCTTTTGAAGAAAGGTTGCGTCTCCTC 212
|| ||| |||| |||||||||||| |||| || ||| ||||||||||||||| |||||||
Sbjct 531 CCTAGCGCGAAGAACCTGATCGGCAATTCAATCTCTCTTGAAGAAAGGTTGCATCTCCTC 590
Query 213 GACAATCTGACAGAGATGGCCGTCACGAAAATAGATAGAAACATAAAAGGTATaaaaaaa 272
||||||| ||| |||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 591 AACAATCTTACAAAGATAGCCGTCACGAAAATAGATAAAAACATAGAAGGTATAAAAAAA 650
Query 273 GCAGTACTGTATGCGGCGGGGGAGAGGAGACTCGGGAAGAATAA-TCTGTACGGAATGGT 331
|||||||||||||||||||||||| ||||||||||| ||| || ||| |||||||||||
Sbjct 651 CCAGTACTGTATGCGGCGGGGGAGAAGAGACTCGGGACGAA-AAGTCTATACGGAATGGT 709
Query 332 GCAGTGCTCTGG-TGACTTATCTGTTCAGGGTTGTAATGAGTGTATGACATATTATACAG 390
||| || || || |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 710 GCAATGTTC-GGCTGACTTATCTGTTCAGGGTTGTAATGAGTGTATGTTATATTATATAG 768
Query 391 TGCATTTTCAAAATTGCT-GGAAAAGCAAACAAGGAGTACGAGTTTTGAGTAGAAGCTGT 449
||||||||||| | |||| |||||| |||||||||||| ||||||||||||||||||||
Sbjct 769 TGCATTTTCAAGAGTGCTGGGAAAA-TAAACAAGGAGTAAGAGTTTTGAGTAGAAGCTGT 827
Query 450 AACTTTAGGTATGAGCTTTACCCTTTTATCAACCCCAAGGGTCCTTACTATACCAAGTTC 509
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 828 AACTTTAGGTATGAGCTTTACCCTTTTATTAACCCTAAGGGTCCTTATTATACAAAGTTC 887
Query 510 TAAAGC 515
||||||
Sbjct 888 TAAAGC 893
> AT3G21910.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7717372-7718405 FORWARD LENGTH=837
Length=837
Score = 207 bits (112), Expect = 6e-53
Identities = 355/466 (76%), Gaps = 41/466 (9%)
Strand=Plus/Plus
Query 36 CTTCGTAAGAGATGTCCGAGAGATAAAGGGGCAATAATATGGTACGACCAATGTCTTGTG 95
||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
Sbjct 346 CTTCGTAGGAGATGTCCGAGATATAAAGGGGGAATAATATGGTTCGACCAATGTCTTCTC 405
Query 96 GACTTTTCTTCGTTAGATACTTTTGGGCAGATCAATTACGACGACAACTTCTGTATGCCC 155
|| |||||||| | |||| | | |||||| ||||||||| || | ||||||||| ||
Sbjct 406 GAGATTTCTTCGATCGATAATGTAGGGCAGCTCAATTACGGTGATAGTTTCTGTATGTCC 465
Query 156 AGCACGAAAAACCTGATCGGCGAT--TCGA-TTTCTTTTGA-A--GAA--AGGTTGCGTC 207
| | |||| || || | || ||| || | |||| ||| | | ||| || | | ||
Sbjct 466 AACGCGAAGAA--TG-TGGGAGATGATCCATTTTC-TTTCATACTGAAGTGGGATAC-TC 520
Query 208 TCCTCGACAATCTGA-CAGAG-ATGGCCGTCAC-GAAAATAGATAGAAACATAAAAGGTA 264
|| |||||||| | | || | || || |||| ||||| | ||| |||| |||||| ||
Sbjct 521 TCTTCGACAATAT-ATCA-CGTATAGCTATCACTGAAAAGA-ATAAAAACTTAAAAGATA 577
Query 265 TaaaaaaaGCAGTACTGTATGCGGCGGGGGAGAGGAGACTCGGG---AAGAATAATCTGT 321
|| ||| | | ||| || | ||||||||||| ||| |||||| ||||| || |||
Sbjct 578 CCAACAAACCGGCACTATACGGGGCGGGGGAGAAGAGGCTCGGGACAAAGAAGAAGATGT 637
Query 322 ACGGAATGGTGCAGTGCT-CTGGTGACTTATCTGTTCAGGGTTGTAATGAGTGTAT-G-- 377
|||||||||| ||||| | | | ||||||||||||| ||| |||| | |||||| | |
Sbjct 638 ACGGAATGGTTCAGTG-TACAGATGACTTATCTGTTAAGGCTTGTGAGGAGTGTCTGGTT 696
Query 378 ACATATTATACAGTGCATTTTCAAAATTGCTGGAAAA---GCAAACAAG-GAGTACGA-- 431
| || ||| | || | ||||||||||||||||||| | |||| | | || |||
Sbjct 697 GC-TAATAT-C-TTGAAGTTTCAAAATTGCTGGAAAAGTGGTAAAC--GCG-GTGCGAGG 750
Query 432 GTTTT-GAGTAGAAGCTGTAACTTTAGGTATGAGCTTTACCCTTTT 476
||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 751 GTTTTGGA-TAGGAGCTGTAACTTTAGGTATGAGCTTTACCCTTTT 795
> AT3G21900.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7715393-7716343 FORWARD LENGTH=753
Length=753
Score = 84.2 bits (45), Expect = 1e-15
Identities = 70/82 (85%), Gaps = 2/82 (2%)
Strand=Plus/Plus
Query 396 TTTCAAAATTGCTGGAAAAGCAAACAAGGAG-TACGAGTTTTGAGTAGAAGCTGTAACTT 454
|||||| |||||||| | | |||||||||| || |||| ||| |||| | ||||||||
Sbjct 637 TTTCAAGATTGCTGGCATGGTAAACAAGGAGCTA-GAGTGTTGGGTAGTGGTTGTAACTT 695
Query 455 TAGGTATGAGCTTTACCCTTTT 476
||||||||||||||||||||||
Sbjct 696 TAGGTATGAGCTTTACCCTTTT 717
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25468712529
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5