BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg930168
Length=427
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21930.1 | Symbols: | Domain of unknown function (DUF26) | ... 553 6e-157
AT3G21920.1 | Symbols: | Domain of unknown function (DUF26) | ... 553 6e-157
> AT3G21930.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7723223-7724338 FORWARD LENGTH=903
Length=903
Score = 553 bits (299), Expect = 6e-157
Identities = 366/399 (92%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 4 AAAATCAATCCAAAACAATGTATTCGTCATCATCTATATCAAAACGCTTTGTTCT-TTAC 62
||||| ||| ||||||||||||||| ||||||||| ||||||||||||| ||||| | |
Sbjct 50 AAAATAAATTCAAAACAATGTATTCTTCATCATCTGTATCAAAACGCTTCGTTCTAGT-C 108
Query 63 CTTACCGTCGTCGTGGTGACCACACAACTCCTCCTTGTACACAGCGTTTCTTCACTCAAC 122
| || || |||||||||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 109 CCTATTGTGGTCGTGGTGACCACACAACTCCTCCTGGTACGTAACGTTTCTTCACTAAAC 168
Query 123 CTTACCAATTCGTATCTCCACCACAAATGCTTAGTCAGTCTAGGGAAATACAAGCCGGGA 182
||||||||||||||||| |||||||||||| |||||| || ||||||||||||||| |||
Sbjct 169 CTTACCAATTCGTATCTTCACCACAAATGCGTAGTCAATCAAGGGAAATACAAGCCAGGA 228
Query 183 AGCGAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCAAATAAAGATAAAAAT 242
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 229 AGCAAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCGAATAAAGATAAAGAT 288
Query 243 TCGTATGGGTTTCGTACTGGTTTCAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 302
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 289 TCGTATGGTTTTCGTACCGGTTACAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 348
Query 303 GCCATCACTTACCAGTGCCGTGTCGACTCTCGCGGGCCCAAGTGCCAGTCCTGCGTTGTC 362
||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 349 TCCATCACCTACCAGTGCCGTATCGACTCTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTC 408
Query 363 ACCGCCGGTTATGAGCTTCTTCGTAAGAGATGTCCGAGA 401
|| ||||||||||||||||||||||||||||||||||||
Sbjct 409 ACGGCCGGTTATGAGCTTCTTCGTAAGAGATGTCCGAGA 447
> AT3G21920.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7720639-7721744 FORWARD LENGTH=893
Length=893
Score = 553 bits (299), Expect = 6e-157
Identities = 366/399 (92%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 4 AAAATCAATCCAAAACAATGTATTCGTCATCATCTATATCAAAACGCTTTGTTCT-TTAC 62
||||| ||| ||||||||||||||| ||||||||| ||||||||||||| ||||| | |
Sbjct 37 AAAATAAATTCAAAACAATGTATTCTTCATCATCTGTATCAAAACGCTTCGTTCTAGT-C 95
Query 63 CTTACCGTCGTCGTGGTGACCACACAACTCCTCCTTGTACACAGCGTTTCTTCACTCAAC 122
| || || |||||||||||||||||||||||||| |||| | |||||||||||| |||
Sbjct 96 CCTATTGTGGTCGTGGTGACCACACAACTCCTCCTGGTACGTAACGTTTCTTCACTAAAC 155
Query 123 CTTACCAATTCGTATCTCCACCACAAATGCTTAGTCAGTCTAGGGAAATACAAGCCGGGA 182
||||||||||||||||| |||||||||||| |||||| || ||||||||||||||| |||
Sbjct 156 CTTACCAATTCGTATCTTCACCACAAATGCGTAGTCAATCAAGGGAAATACAAGCCAGGA 215
Query 183 AGCGAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCAAATAAAGATAAAAAT 242
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 216 AGCAAGTACGAGAAATCCCTCGATGATATCATCCAAAGCTTTTCGAATAAAGATAAAGAT 275
Query 243 TCGTATGGGTTTCGTACTGGTTTCAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 302
|||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 276 TCGTATGGTTTTCGTACCGGTTACAGCATGAAGGCCTACGGTAAAGAACCTGATATGGTC 335
Query 303 GCCATCACTTACCAGTGCCGTGTCGACTCTCGCGGGCCCAAGTGCCAGTCCTGCGTTGTC 362
||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 336 TCCATCACCTACCAGTGCCGTATCGACTCTCGTGGGCCCAAGTGCCAGTCCTGCGTTGTC 395
Query 363 ACCGCCGGTTATGAGCTTCTTCGTAAGAGATGTCCGAGA 401
|| ||||||||||||||||||||||||||||||||||||
Sbjct 396 ACGGCCGGTTATGAGCTTCTTCGTAAGAGATGTCCGAGA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20257902847
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5